Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 852827..853484 Replicon chromosome
Accession NZ_CP011980
Organism Klebsiella pneumoniae 500_1420

Toxin (Protein)


Gene name cptA Uniprot ID W8UCT0
Locus tag J052_RS04365 Protein ID WP_002916310.1
Coordinates 853074..853484 (+) Length 137 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID W8UQ37
Locus tag J052_RS04360 Protein ID WP_002916312.1
Coordinates 852827..853093 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
J052_RS04335 847983..849416 - 1434 WP_002916322.1 6-phospho-beta-glucosidase BglA -
J052_RS04340 849535..850263 - 729 WP_002916321.1 MurR/RpiR family transcriptional regulator -
J052_RS04345 850313..850624 + 312 WP_002916319.1 N(4)-acetylcytidine aminohydrolase -
J052_RS04350 850788..851447 + 660 WP_002916317.1 hemolysin III family protein -
J052_RS04355 851598..852581 - 984 WP_002916313.1 tRNA-modifying protein YgfZ -
J052_RS04360 852827..853093 + 267 WP_002916312.1 FAD assembly factor SdhE Antitoxin
J052_RS04365 853074..853484 + 411 WP_002916310.1 protein YgfX Toxin
J052_RS04370 853491..854012 - 522 WP_002916308.1 flavodoxin FldB -
J052_RS04375 854113..855009 + 897 WP_004144729.1 site-specific tyrosine recombinase XerD -
J052_RS04380 855032..855745 + 714 WP_002916301.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
J052_RS04385 855751..857484 + 1734 WP_004151783.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-132)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 16049.85 Da        Isoelectric Point: 11.4778

>T55349 WP_002916310.1 NZ_CP011980:853074-853484 [Klebsiella pneumoniae 500_1420]
VVLWQSDLRISWRAQWFSLLLHGVVAALVLLVPWPLSYTPIWLLLLSLVVFDCVRSQRRIHARRGEIKLLTDSRLRWQNA
EWEILGTPWVINSGMLLRLRHVDTRRGQHLWLAADSMDAGEWRDLRRLVLQKPAQE

Download         Length: 411 bp

>T55349 NZ_CP011980:853074-853484 [Klebsiella pneumoniae 500_1420]
GTGGTCCTGTGGCAATCTGATCTCCGTATCTCCTGGCGCGCGCAGTGGTTTTCCCTGCTGCTTCACGGCGTGGTGGCGGC
CCTGGTGCTGTTGGTTCCCTGGCCGCTGAGCTATACCCCGATCTGGCTGCTGCTGCTGTCGCTGGTGGTCTTCGACTGCG
TGCGCAGCCAGCGGCGGATCCATGCCCGTCGCGGGGAGATAAAACTGCTCACCGATTCCCGTCTTCGCTGGCAAAACGCC
GAATGGGAAATCCTCGGGACGCCGTGGGTTATCAATAGCGGTATGCTGCTGCGTTTGCGCCATGTCGATACCCGGCGCGG
ACAGCATCTTTGGCTGGCGGCGGACAGCATGGACGCCGGAGAGTGGCGCGATCTGCGCCGGCTGGTGCTGCAAAAACCGG
CGCAGGAGTAA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10480.98 Da        Isoelectric Point: 5.1116

>AT55349 WP_002916312.1 NZ_CP011980:852827-853093 [Klebsiella pneumoniae 500_1420]
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDADKQLFIRLLENDDPDLFNWLMNHGKPADAELQRMVTLIQTRN
RERGPVAI

Download         Length: 267 bp

>AT55349 NZ_CP011980:852827-853093 [Klebsiella pneumoniae 500_1420]
ATGGACATTAACAATAAAGCACGTATCCACTGGGCATGCCGCCGCGGGATGCGCGAACTCGACATCTCCATCATGCCGTT
CTTTGAGTATGAGTACGATACCCTCAGCGACGCTGACAAACAGCTGTTCATTCGCCTGCTGGAAAATGACGATCCGGATC
TGTTCAACTGGCTGATGAACCACGGCAAACCGGCCGATGCGGAGCTGCAGCGGATGGTAACCTTAATTCAGACACGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GSW7

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GY41

References