Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/ParE-RelB |
Location | 6241088..6241607 | Replicon | chromosome |
Accession | NZ_CP011972 | ||
Organism | Pseudomonas syringae pv. actinidiae ICMP 18884 |
Toxin (Protein)
Gene name | relE | Uniprot ID | S6W9N2 |
Locus tag | IYO_RS28020 | Protein ID | WP_017684310.1 |
Coordinates | 6241088..6241378 (-) | Length | 97 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | S6UWW5 |
Locus tag | IYO_RS28025 | Protein ID | WP_002551444.1 |
Coordinates | 6241368..6241607 (-) | Length | 80 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
IYO_RS27995 | 6237418..6237960 | + | 543 | WP_017684306.1 | hypothetical protein | - |
IYO_RS32765 | 6238024..6238307 | - | 284 | Protein_5501 | type II toxin-antitoxin system RelE/ParE family toxin | - |
IYO_RS28000 | 6238297..6238539 | - | 243 | WP_017684307.1 | hypothetical protein | - |
IYO_RS28005 | 6238720..6239334 | - | 615 | WP_017684308.1 | histidine phosphatase family protein | - |
IYO_RS28010 | 6239427..6239768 | - | 342 | WP_003380754.1 | hypothetical protein | - |
IYO_RS28015 | 6240125..6240862 | + | 738 | WP_017684309.1 | hypothetical protein | - |
IYO_RS28020 | 6241088..6241378 | - | 291 | WP_017684310.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
IYO_RS28025 | 6241368..6241607 | - | 240 | WP_002551444.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
IYO_RS28030 | 6241783..6242244 | - | 462 | WP_017684311.1 | GNAT family N-acetyltransferase | - |
IYO_RS28035 | 6242331..6242900 | - | 570 | WP_017684312.1 | GNAT family N-acetyltransferase | - |
IYO_RS28040 | 6243061..6243555 | + | 495 | WP_005621707.1 | hypothetical protein | - |
IYO_RS28045 | 6243828..6244175 | + | 348 | WP_017684314.1 | helix-turn-helix domain-containing protein | - |
IYO_RS28050 | 6244261..6245535 | - | 1275 | WP_003380766.1 | OprD family porin | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 a.a. Molecular weight: 11145.98 Da Isoelectric Point: 10.0984
>T55307 WP_017684310.1 NZ_CP011972:c6241378-6241088 [Pseudomonas syringae pv. actinidiae ICMP 18884]
MTYSLEFDARALKEWHKLGDTVRQQLKKKLATILVAPRVEANRLHALPDCYKIKLRSSGYRLVYQVIDQEVVVFVVAVDK
RERDEVYRKAADRLGG
MTYSLEFDARALKEWHKLGDTVRQQLKKKLATILVAPRVEANRLHALPDCYKIKLRSSGYRLVYQVIDQEVVVFVVAVDK
RERDEVYRKAADRLGG
Download Length: 291 bp
>T55307 NZ_CP011972:c6241378-6241088 [Pseudomonas syringae pv. actinidiae ICMP 18884]
ATGACTTATAGCCTCGAATTTGATGCGCGAGCTCTGAAGGAATGGCACAAATTAGGCGATACCGTGCGTCAGCAGCTCAA
GAAAAAGCTGGCTACGATTCTGGTTGCTCCGCGTGTTGAAGCAAATCGCCTGCATGCGTTGCCCGACTGCTACAAAATCA
AGCTGCGCAGCAGCGGCTATCGGCTGGTTTATCAGGTTATTGACCAAGAGGTTGTGGTCTTCGTGGTTGCTGTGGACAAG
CGTGAGCGAGATGAGGTTTACCGTAAGGCGGCTGATCGGTTGGGTGGGTAA
ATGACTTATAGCCTCGAATTTGATGCGCGAGCTCTGAAGGAATGGCACAAATTAGGCGATACCGTGCGTCAGCAGCTCAA
GAAAAAGCTGGCTACGATTCTGGTTGCTCCGCGTGTTGAAGCAAATCGCCTGCATGCGTTGCCCGACTGCTACAAAATCA
AGCTGCGCAGCAGCGGCTATCGGCTGGTTTATCAGGTTATTGACCAAGAGGTTGTGGTCTTCGTGGTTGCTGTGGACAAG
CGTGAGCGAGATGAGGTTTACCGTAAGGCGGCTGATCGGTTGGGTGGGTAA
Antitoxin
Download Length: 80 a.a. Molecular weight: 8955.34 Da Isoelectric Point: 4.6017
>AT55307 WP_002551444.1 NZ_CP011972:c6241607-6241368 [Pseudomonas syringae pv. actinidiae ICMP 18884]
MASINVRIDDDLKARAYLELEKLGVTPSELLRQTLQYVAERGQLPFKTVLMTEEDEALLATVRERLAAPQRVKVSLDDL
MASINVRIDDDLKARAYLELEKLGVTPSELLRQTLQYVAERGQLPFKTVLMTEEDEALLATVRERLAAPQRVKVSLDDL
Download Length: 240 bp
>AT55307 NZ_CP011972:c6241607-6241368 [Pseudomonas syringae pv. actinidiae ICMP 18884]
ATGGCGTCTATTAATGTTCGTATCGACGACGATCTCAAGGCTCGTGCTTATCTCGAGCTTGAAAAGCTTGGCGTCACCCC
TTCGGAACTGCTGCGCCAAACCCTGCAGTACGTGGCAGAGCGCGGCCAGTTGCCGTTCAAGACCGTACTGATGACCGAGG
AAGACGAAGCCTTGCTTGCAACAGTGCGCGAGCGCCTTGCGGCTCCGCAACGGGTCAAGGTTTCACTGGATGACTTATAG
ATGGCGTCTATTAATGTTCGTATCGACGACGATCTCAAGGCTCGTGCTTATCTCGAGCTTGAAAAGCTTGGCGTCACCCC
TTCGGAACTGCTGCGCCAAACCCTGCAGTACGTGGCAGAGCGCGGCCAGTTGCCGTTCAAGACCGTACTGATGACCGAGG
AAGACGAAGCCTTGCTTGCAACAGTGCGCGAGCGCCTTGCGGCTCCGCAACGGGTCAAGGTTTCACTGGATGACTTATAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0K8M1I3 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0K8M1G9 |