55275

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 4008673..4010354 Replicon chromosome
Accession NZ_CP011962
Organism Xanthomonas oryzae pv. oryzicola strain CFBP2286

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag ACU11_RS17510 Protein ID WP_048484967.1
Coordinates 4008673..4009287 (+) Length 205 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag ACU11_RS17515 Protein ID WP_041183453.1
Coordinates 4009284..4010354 (+) Length 357 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ACU11_RS17490 4004592..4005242 + 651 WP_048484965.1 SGNH/GDSL hydrolase family protein -
ACU11_RS17495 4005565..4006236 + 672 WP_024745633.1 class I SAM-dependent methyltransferase -
ACU11_RS17500 4006540..4007331 - 792 WP_024710587.1 polysaccharide deacetylase family protein -
ACU11_RS17505 4007377..4008303 + 927 WP_048484966.1 Grx4 family monothiol glutaredoxin -
ACU11_RS17510 4008673..4009287 + 615 WP_048484967.1 DUF4433 domain-containing protein Toxin
ACU11_RS17515 4009284..4010354 + 1071 WP_041183453.1 macro domain-containing protein Antitoxin
ACU11_RS17520 4010463..4011023 - 561 WP_014504560.1 DUF924 family protein -
ACU11_RS17525 4011163..4012572 + 1410 WP_014504561.1 amidohydrolase -
ACU11_RS17530 4012569..4013849 + 1281 WP_014504562.1 amidohydrolase family protein -
ACU11_RS17535 4014153..4014479 + 327 WP_041183782.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(3-203)

Antitoxin

Macro domain

(18-130)


Sequences

Toxin        


Download         Length: 205 a.a.        Molecular weight: 23755.09 Da        Isoelectric Point: 7.9237

>T55275 WP_048484967.1 NZ_CP011962:4008673-4009287 [Xanthomonas oryzae pv. oryzicola]
MIWRITHRGNLPWILDNGLHCGNAAVQSSTWVSIGNPELIDKRSSHPVPLPPGGFLNDYVPFYFTPFLPMLRNIHTAWGG
IQRRPNEDIVILVSSLHHVAERRWPFLFTDSHAYCQLASFYSDLSDLDKIDWPLLQARDFRRDPDDPAKFERYQAEALIH
RHVPLDGLRGIVCHTDGLKQTIERQLQERNLKLPVHTRTGWYFR

Download         Length: 615 bp

>T55275 NZ_CP011962:4008673-4009287 [Xanthomonas oryzae pv. oryzicola]
CTGATCTGGCGCATCACCCACCGGGGCAATCTGCCGTGGATTCTGGACAACGGTCTGCACTGTGGTAATGCCGCTGTGCA
GAGTTCGACTTGGGTGAGCATCGGCAACCCAGAACTGATCGACAAGCGCTCCAGTCATCCTGTACCGCTTCCACCGGGCG
GCTTCTTAAACGATTACGTGCCGTTCTACTTCACTCCGTTTTTGCCGATGCTGCGCAACATCCATACCGCCTGGGGTGGA
ATCCAAAGGCGGCCTAACGAAGACATCGTCATCCTTGTTTCCAGCTTGCATCATGTCGCCGAACGCCGATGGCCGTTTCT
GTTTACTGACAGCCACGCCTACTGCCAGTTGGCGAGCTTCTATTCCGATTTATCTGATCTCGACAAGATCGACTGGCCGT
TGCTGCAAGCACGCGATTTCCGGCGCGACCCAGACGACCCAGCCAAGTTCGAGCGCTATCAGGCCGAGGCCCTGATTCAC
CGACACGTGCCGCTTGATGGCCTGCGCGGCATTGTGTGTCATACGGATGGTTTGAAACAGACCATCGAGCGGCAACTCCA
AGAGCGAAACCTGAAATTGCCGGTTCATACCCGCACCGGGTGGTATTTCCGATGA

Antitoxin


Download         Length: 357 a.a.        Molecular weight: 40018.97 Da        Isoelectric Point: 5.7473

>AT55275 WP_041183453.1 NZ_CP011962:4009284-4010354 [Xanthomonas oryzae pv. oryzicola]
MITFTQGNLLESGAEALVNTVNTVGVMGKGIALMFKERFKENFLRYAAACKDNQVRIGKIFVTEVNELDGPRWIINFPTK
QHWRGDSRIEWITEGLQDLHRFLSENKVKSIAIPPLGAGNGGLDWAEVRPLIEEVLAGLDTDILVFEPTLKYQNVAKRSG
VEKLTPARALIAELVRRYWVLGMECSLLEIQKLAWFLERNIERAGLPELDLRFSAHKYGPYADRLRHLLNGLDGSYLHCD
KRISDADPLDVIWFDDNRKSFVQTYLKSEAKQYIPALEATAALIDGFESPFGMELLATVDWLIVQEGISAQVADVREGIR
HWPGDQEAAARKDRLFDDRALGIALKRLASGAIAVA

Download         Length: 1071 bp

>AT55275 NZ_CP011962:4009284-4010354 [Xanthomonas oryzae pv. oryzicola]
ATGATCACGTTCACACAAGGCAATCTACTGGAGTCTGGCGCAGAGGCGCTGGTCAACACCGTCAACACCGTCGGCGTGAT
GGGCAAGGGCATCGCGCTGATGTTCAAGGAGCGCTTCAAGGAGAACTTCCTCCGATATGCCGCCGCCTGCAAAGACAACC
AAGTGCGCATTGGCAAAATTTTCGTCACCGAAGTCAACGAACTGGACGGGCCACGCTGGATCATCAATTTTCCGACCAAA
CAGCACTGGCGTGGCGATTCCCGCATCGAATGGATCACTGAAGGATTGCAGGACTTGCACCGTTTTCTGAGCGAGAACAA
AGTCAAATCCATTGCCATCCCGCCACTGGGCGCGGGCAATGGAGGATTGGACTGGGCCGAGGTGCGCCCACTGATCGAAG
AAGTACTAGCAGGTTTGGATACAGACATCCTCGTGTTCGAGCCTACCTTGAAGTATCAGAACGTTGCCAAGCGCTCCGGC
GTGGAAAAATTGACCCCGGCACGCGCCTTGATTGCCGAGCTGGTACGTCGTTACTGGGTGCTAGGTATGGAATGCAGCCT
GTTGGAAATCCAGAAACTGGCGTGGTTCCTTGAACGCAACATCGAGCGAGCGGGCTTGCCTGAGCTTGATTTGCGCTTTT
CAGCACACAAGTACGGCCCTTATGCCGACCGTCTACGCCATCTTCTGAACGGGCTGGACGGAAGCTACCTGCATTGTGAC
AAACGGATCAGCGACGCCGACCCGCTGGACGTGATCTGGTTCGACGACAATCGCAAAAGTTTCGTACAGACCTACCTAAA
GAGCGAGGCGAAACAGTACATTCCAGCACTGGAAGCTACTGCCGCCTTGATCGATGGTTTTGAATCTCCTTTTGGCATGG
AGTTGTTGGCGACAGTTGACTGGCTGATTGTGCAGGAAGGTATCTCTGCGCAAGTTGCCGACGTGCGTGAAGGCATACGC
CACTGGCCAGGTGATCAGGAGGCAGCGGCGCGAAAGGACAGACTGTTCGATGACCGCGCCTTGGGGATCGCGCTGAAACG
ACTGGCATCAGGTGCAATCGCAGTGGCTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References