Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3043608..3043876 | Replicon | chromosome |
| Accession | NZ_CP011915 | ||
| Organism | Escherichia coli strain PSUO2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3043736..3043838 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3043608..3043876 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJ74_RS15255 | 3040162..3040824 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ACJ74_RS15260 | 3040847..3041503 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| ACJ74_RS15265 | 3041605..3041835 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ACJ74_RS15270 | 3041974..3042348 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ACJ74_RS15275 | 3042352..3043224 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| ACJ74_RS15280 | 3043237..3043578 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3043608..3043876 | - | 269 | - | - | Antitoxin |
| - | 3043736..3043838 | + | 103 | - | - | Toxin |
| ACJ74_RS15285 | 3043973..3044629 | + | 657 | WP_000812742.1 | protein-serine/threonine phosphatase | - |
| ACJ74_RS15290 | 3044630..3044821 | - | 192 | WP_001317886.1 | YebW family protein | - |
| ACJ74_RS15295 | 3044926..3045162 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ACJ74_RS15300 | 3045280..3046719 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T55173 NZ_CP011915:3043736-3043838 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT55173 NZ_CP011915:c3043876-3043608 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
