Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3379311..3379461 | Replicon | chromosome |
| Accession | NZ_CP011798 | ||
| Organism | Enterobacter ludwigii strain UW5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3379323..3379426 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3379311..3379461 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABT55_RS15950 | 3375162..3375401 | + | 240 | WP_020883412.1 | YebV family protein | - |
| ABT55_RS15955 | 3375436..3376080 | - | 645 | WP_047955768.1 | protein-serine/threonine phosphatase | - |
| ABT55_RS15960 | 3376248..3377189 | + | 942 | WP_014170619.1 | VirK/YbjX family protein | - |
| ABT55_RS23710 | 3377740..3377998 | + | 259 | Protein_3133 | XRE family transcriptional regulator | - |
| ABT55_RS15965 | 3378009..3378875 | + | 867 | WP_047955769.1 | benzoate transporter | - |
| - | 3379311..3379461 | + | 151 | - | - | Antitoxin |
| - | 3379323..3379426 | - | 104 | - | - | Toxin |
| ABT55_RS15970 | 3379565..3379903 | - | 339 | WP_014170622.1 | YebY family protein | - |
| ABT55_RS15975 | 3379920..3380789 | - | 870 | WP_047366330.1 | copper homeostasis membrane protein CopD | - |
| ABT55_RS15980 | 3380791..3381162 | - | 372 | WP_020883407.1 | CopC domain-containing protein YobA | - |
| ABT55_RS15985 | 3381300..3381530 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| ABT55_RS15990 | 3381639..3382289 | + | 651 | WP_020883406.1 | carbon-nitrogen hydrolase family protein | - |
| ABT55_RS15995 | 3382314..3382976 | + | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T55039 NZ_CP011798:c3379426-3379323 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT55039 NZ_CP011798:3379311-3379461 [Enterobacter ludwigii]
TTTATAATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TTTATAATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
