Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2353496..2353705 | Replicon | chromosome |
| Accession | NZ_CP011662 | ||
| Organism | Enterobacter hormaechei strain CAV1176 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2353589..2353692 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2353496..2353705 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB284_RS12635 | 2350033..2350695 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| AB284_RS12640 | 2350720..2351370 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| AB284_RS12645 | 2351482..2351712 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| AB284_RS12650 | 2351850..2352221 | + | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| AB284_RS12655 | 2352223..2353092 | + | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| AB284_RS12660 | 2353109..2353447 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 2353496..2353705 | - | 210 | - | - | Antitoxin |
| AB284_RS12665 | 2353573..2353770 | - | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2353589..2353692 | + | 104 | - | - | Toxin |
| AB284_RS12670 | 2353816..2354796 | - | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| AB284_RS12675 | 2354964..2355608 | + | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| AB284_RS12680 | 2355643..2355882 | - | 240 | WP_003859885.1 | YebV family protein | - |
| AB284_RS12685 | 2355989..2357437 | - | 1449 | WP_195892607.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T54813 NZ_CP011662:2353589-2353692 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT54813 NZ_CP011662:c2353705-2353496 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
