Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2305754..2305963 | Replicon | chromosome |
| Accession | NZ_CP011650 | ||
| Organism | Enterobacter hormaechei strain CAV1669 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2305767..2305870 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2305754..2305963 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB285_RS11575 | 2302022..2303470 | + | 1449 | WP_195892607.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AB285_RS11580 | 2303577..2303816 | + | 240 | WP_003859885.1 | YebV family protein | - |
| AB285_RS11585 | 2303851..2304495 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| AB285_RS11590 | 2304663..2305643 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| AB285_RS11595 | 2305689..2305886 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2305754..2305963 | + | 210 | - | - | Antitoxin |
| - | 2305767..2305870 | - | 104 | - | - | Toxin |
| AB285_RS11600 | 2306012..2306350 | - | 339 | WP_003859787.1 | YebY family protein | - |
| AB285_RS11605 | 2306367..2307236 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| AB285_RS11610 | 2307238..2307609 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| AB285_RS11615 | 2307747..2307977 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| AB285_RS11620 | 2308089..2308739 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| AB285_RS11625 | 2308764..2309426 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T54771 NZ_CP011650:c2305870-2305767 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT54771 NZ_CP011650:2305754-2305963 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
