Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4524753..4524898 | Replicon | chromosome |
| Accession | NZ_CP011647 | ||
| Organism | Klebsiella pneumoniae strain CAV1596 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4524760..4524862 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4524753..4524898 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB187_RS24150 | 4520285..4521718 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AB187_RS24155 | 4521834..4522073 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AB187_RS24160 | 4522171..4522362 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AB187_RS24165 | 4522359..4523012 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| AB187_RS24170 | 4523169..4524137 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AB187_RS30575 | 4524242..4524385 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4524753..4524898 | + | 146 | - | - | Antitoxin |
| - | 4524760..4524862 | - | 103 | - | - | Toxin |
| AB187_RS24180 | 4525021..4525359 | - | 339 | WP_002911404.1 | YebY family protein | - |
| AB187_RS24185 | 4525376..4526245 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| AB187_RS24190 | 4526249..4526623 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AB187_RS24195 | 4526736..4526966 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AB187_RS24200 | 4527045..4527704 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AB187_RS24205 | 4527708..4529768 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T54761 NZ_CP011647:c4524862-4524760 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT54761 NZ_CP011647:4524753-4524898 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
