Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4142543..4142688 | Replicon | chromosome |
| Accession | NZ_CP011624 | ||
| Organism | Klebsiella pneumoniae strain CAV1344 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4142579..4142681 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4142543..4142688 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB186_RS23590 | 4137673..4139733 | + | 2061 | WP_040213005.1 | oligopeptidase B | - |
| AB186_RS23595 | 4139737..4140396 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| AB186_RS23600 | 4140475..4140705 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AB186_RS23605 | 4140818..4141192 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AB186_RS23610 | 4141196..4142065 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| AB186_RS23615 | 4142082..4142420 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4142543..4142688 | - | 146 | - | - | Antitoxin |
| - | 4142579..4142681 | + | 103 | - | - | Toxin |
| AB186_RS31970 | 4143056..4143199 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AB186_RS23625 | 4143304..4144272 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AB186_RS23630 | 4144429..4145082 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| AB186_RS23635 | 4145079..4145270 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AB186_RS23640 | 4145368..4145607 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AB186_RS23645 | 4145723..4147156 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T54716 NZ_CP011624:4142579-4142681 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT54716 NZ_CP011624:c4142688-4142543 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
