Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 6045659..6045804 | Replicon | chromosome |
| Accession | NZ_CP011618 | ||
| Organism | Klebsiella oxytoca strain CAV1335 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 6045694..6045797 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 6045659..6045804 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB181_RS30715 | 6040763..6042823 | + | 2061 | WP_016808307.1 | oligopeptidase B | - |
| AB181_RS30720 | 6042830..6043489 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| AB181_RS30725 | 6043568..6043798 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| AB181_RS30730 | 6043934..6044308 | + | 375 | WP_016808306.1 | CopC domain-containing protein YobA | - |
| AB181_RS30735 | 6044313..6045182 | + | 870 | WP_047720985.1 | copper homeostasis membrane protein CopD | - |
| AB181_RS30740 | 6045199..6045537 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 6045659..6045804 | - | 146 | - | - | Antitoxin |
| - | 6045694..6045797 | + | 104 | - | - | Toxin |
| AB181_RS30745 | 6045924..6046883 | - | 960 | WP_004113762.1 | spore coat U domain-containing protein | - |
| AB181_RS30750 | 6046895..6049228 | - | 2334 | WP_047720986.1 | fimbrial biogenesis outer membrane usher protein | - |
| AB181_RS30755 | 6049231..6049995 | - | 765 | WP_004103339.1 | molecular chaperone | - |
| AB181_RS30760 | 6050013..6050531 | - | 519 | WP_032692328.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T54695 NZ_CP011618:6045694-6045797 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT54695 NZ_CP011618:c6045804-6045659 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
