Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 307926..308069 | Replicon | chromosome |
| Accession | NZ_CP011612 | ||
| Organism | Citrobacter freundii strain CAV1321 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 307961..308064 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 307926..308069 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB180_RS04545 | 304373..305035 | - | 663 | WP_003034918.1 | exodeoxyribonuclease X | - |
| AB180_RS04550 | 305059..305715 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| AB180_RS04555 | 305822..306052 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| AB180_RS04560 | 306196..306570 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| AB180_RS04565 | 306574..307446 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| AB180_RS04570 | 307467..307805 | + | 339 | WP_044700293.1 | YebY family protein | - |
| - | 307926..308069 | - | 144 | - | - | Antitoxin |
| - | 307961..308064 | + | 104 | - | - | Toxin |
| AB180_RS04575 | 308218..308859 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| AB180_RS04580 | 308860..309051 | - | 192 | WP_003034941.1 | YebW family protein | - |
| AB180_RS04585 | 309154..309390 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| AB180_RS04590 | 309491..310879 | - | 1389 | WP_044700319.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T54671 NZ_CP011612:307961-308064 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT54671 NZ_CP011612:c308069-307926 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
