Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 6014093..6014238 | Replicon | chromosome |
| Accession | NZ_CP011597 | ||
| Organism | Klebsiella oxytoca strain CAV1099 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 6014128..6014231 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 6014093..6014238 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB184_RS30405 | 6009197..6011257 | + | 2061 | WP_016808307.1 | oligopeptidase B | - |
| AB184_RS30410 | 6011264..6011923 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| AB184_RS30415 | 6012002..6012232 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| AB184_RS30420 | 6012368..6012742 | + | 375 | WP_016808306.1 | CopC domain-containing protein YobA | - |
| AB184_RS30425 | 6012747..6013616 | + | 870 | WP_047720985.1 | copper homeostasis membrane protein CopD | - |
| AB184_RS30430 | 6013633..6013971 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 6014093..6014238 | - | 146 | - | - | Antitoxin |
| - | 6014128..6014231 | + | 104 | - | - | Toxin |
| AB184_RS30435 | 6014358..6015317 | - | 960 | WP_004113762.1 | spore coat U domain-containing protein | - |
| AB184_RS30440 | 6015329..6017662 | - | 2334 | WP_047720986.1 | fimbrial biogenesis outer membrane usher protein | - |
| AB184_RS30445 | 6017665..6018429 | - | 765 | WP_004103339.1 | molecular chaperone | - |
| AB184_RS30450 | 6018447..6018965 | - | 519 | WP_032692328.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T54659 NZ_CP011597:6014128-6014231 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT54659 NZ_CP011597:c6014238-6014093 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
