Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 293234..293379 | Replicon | chromosome |
| Accession | NZ_CP011591 | ||
| Organism | Enterobacter asburiae strain CAV1043 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 293241..293344 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 293234..293379 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB190_RS02850 | 288382..289026 | - | 645 | WP_047741694.1 | protein-serine/threonine phosphatase | - |
| AB190_RS02855 | 289192..290139 | + | 948 | WP_047741695.1 | VirK/YbjX family protein | - |
| AB190_RS26135 | 290476..290781 | + | 306 | WP_154816935.1 | hypothetical protein | - |
| AB190_RS02860 | 290798..292027 | + | 1230 | WP_047741696.1 | nucleoside 2-deoxyribosyltransferase | - |
| AB190_RS24895 | 292024..292620 | + | 597 | WP_071845429.1 | 7-cyano-7-deazaguanine synthase | - |
| - | 293234..293379 | + | 146 | - | - | Antitoxin |
| - | 293241..293344 | - | 104 | - | - | Toxin |
| AB190_RS02865 | 293483..293821 | - | 339 | WP_045404471.1 | YebY family protein | - |
| AB190_RS02870 | 293838..294707 | - | 870 | WP_047741697.1 | copper homeostasis membrane protein CopD | - |
| AB190_RS02875 | 294709..295080 | - | 372 | WP_047741698.1 | CopC domain-containing protein YobA | - |
| AB190_RS02880 | 295217..295447 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| AB190_RS02885 | 295558..296208 | + | 651 | WP_047741699.1 | carbon-nitrogen hydrolase family protein | - |
| AB190_RS02890 | 296233..296895 | + | 663 | WP_045355977.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T54638 NZ_CP011591:c293344-293241 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT54638 NZ_CP011591:293234-293379 [Enterobacter asburiae]
AAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
