Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2333227..2333436 | Replicon | chromosome |
| Accession | NZ_CP011584 | ||
| Organism | Enterobacter hormaechei strain CAV1668 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2333240..2333343 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2333227..2333436 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABY64_RS11740 | 2329495..2330943 | + | 1449 | WP_195892607.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ABY64_RS11745 | 2331050..2331289 | + | 240 | WP_003859885.1 | YebV family protein | - |
| ABY64_RS11750 | 2331324..2331968 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| ABY64_RS11755 | 2332136..2333116 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| ABY64_RS11760 | 2333162..2333359 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2333227..2333436 | + | 210 | - | - | Antitoxin |
| - | 2333240..2333343 | - | 104 | - | - | Toxin |
| ABY64_RS11765 | 2333485..2333823 | - | 339 | WP_003859787.1 | YebY family protein | - |
| ABY64_RS11770 | 2333840..2334709 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| ABY64_RS11775 | 2334711..2335082 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| ABY64_RS11780 | 2335220..2335450 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| ABY64_RS11785 | 2335562..2336212 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| ABY64_RS11790 | 2336237..2336899 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T54618 NZ_CP011584:c2333343-2333240 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT54618 NZ_CP011584:2333227-2333436 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
