Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 101304..101450 | Replicon | chromosome |
| Accession | NZ_CP011574 | ||
| Organism | Klebsiella aerogenes strain CAV1320 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 101339..101442 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 101304..101450 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABY61_RS00565 | 96413..98473 | + | 2061 | WP_047739456.1 | oligopeptidase B | - |
| ABY61_RS00570 | 98476..99135 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| ABY61_RS00575 | 99215..99445 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| ABY61_RS00580 | 99580..99954 | + | 375 | WP_042893410.1 | CopC domain-containing protein YobA | - |
| ABY61_RS00585 | 99958..100827 | + | 870 | WP_045411478.1 | copper homeostasis membrane protein CopD | - |
| ABY61_RS00590 | 100841..101182 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 101304..101450 | - | 147 | - | - | Antitoxin |
| - | 101339..101442 | + | 104 | - | - | Toxin |
| ABY61_RS00595 | 101570..102517 | - | 948 | WP_032709999.1 | spore coat U domain-containing protein | - |
| ABY61_RS00600 | 102536..104860 | - | 2325 | WP_047739458.1 | fimbrial biogenesis outer membrane usher protein | - |
| ABY61_RS00605 | 104863..105612 | - | 750 | WP_015366013.1 | molecular chaperone | - |
| ABY61_RS00610 | 105630..106148 | - | 519 | WP_045411482.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T54564 NZ_CP011574:101339-101442 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT54564 NZ_CP011574:c101450-101304 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
