Detailed information of TA system TA054449

Bioinformatically predicted

Overview

TA module

• Type: VIII
• Classification (family/domain): SdsR-RyeA/-
• Location: 1860590..1860700
• Replicon: chromosome
• Accession: NZ_CP011516
• Organism: Edwardsiella sp. LADL05-105

Toxin (RNA)

Gene name	SdsR
Locus tag	-
Coordinates	1860592..1860693 (-)

Antitoxin (RNA)

Gene name	RyeA
Locus tag	-
Coordinates	1860590..1860700 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
AAZ33_RS08395	1856350..1856631	-	282	WP_015871319.1	type II toxin-antitoxin system RelE/ParE family toxin	-
AAZ33_RS08400	1856621..1856872	-	252	WP_015871318.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
AAZ33_RS08405	1857160..1857627	+	468	Protein_1661	hypothetical protein	-
AAZ33_RS08410	1857638..1857985	+	348	WP_144242832.1	hypothetical protein	-
AAZ33_RS08415	1858357..1860231	+	1875	WP_034165826.1	PhoX family phosphatase	-
-	1860590..1860700	+	111	-	-	Antitoxin
-	1860592..1860693	-	102	-	-	Toxin
AAZ33_RS08420	1861668..1864832	+	3165	WP_158409708.1	autotransporter outer membrane beta-barrel domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Prophage	-	-	1823723..1866839	43116

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Sequences

Toxin

Nucleotide

• Length: 102 bp

>T54449 NZ_CP011516:c1860693-1860592 [Edwardsiella sp. LADL05-105]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT

Antitoxin

Nucleotide

• Length: 111 bp

>AT54449 NZ_CP011516:1860590-1860700 [Edwardsiella sp. LADL05-105]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA

Structures

Antitoxin

Antitoxin