Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1246604..1246837 | Replicon | chromosome |
| Accession | NZ_CP011511 | ||
| Organism | Shigella boydii strain ATCC 9210 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1246733..1246836 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1246604..1246837 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABE81_RS06965 | 1241844..1243057 | + | 1214 | WP_134810244.1 | IS3 family transposase | - |
| ABE81_RS06970 | 1243164..1243826 | - | 663 | WP_000944260.1 | exodeoxyribonuclease X | - |
| ABE81_RS06975 | 1243850..1244506 | - | 657 | WP_000011642.1 | carbon-nitrogen hydrolase family protein | - |
| ABE81_RS06980 | 1244608..1244838 | - | 231 | WP_000916761.1 | DNA polymerase III subunit theta | - |
| ABE81_RS06985 | 1244977..1245351 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ABE81_RS06990 | 1245355..1246222 | + | 868 | Protein_1246 | copper homeostasis membrane protein CopD | - |
| ABE81_RS06995 | 1246235..1246576 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1246604..1246837 | - | 234 | - | - | Antitoxin |
| - | 1246733..1246836 | + | 104 | - | - | Toxin |
| ABE81_RS07005 | 1246958..1247428 | - | 471 | WP_071821702.1 | tyrosine-type recombinase/integrase | - |
| ABE81_RS07025 | 1248918..1250019 | + | 1102 | Protein_1250 | IS3 family transposase | - |
| ABE81_RS07030 | 1250118..1250567 | - | 450 | Protein_1251 | IS1 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | IScluster/Tn | - | ipaH9.8 | 1239538..1259014 | 19476 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T54433 NZ_CP011511:1246733-1246836 [Shigella boydii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 234 bp
>AT54433 NZ_CP011511:c1246837-1246604 [Shigella boydii]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
