Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3177739..3178010 Replicon chromosome
Accession NZ_CP011495
Organism Escherichia coli strain NCM3722 isolate K-12

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3177777..3177880 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3177739..3178010 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AA953_RS15875 3174896..3176335 + 1440 WP_001352260.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
AA953_RS15880 3176453..3176689 + 237 WP_001295499.1 DUF1480 family protein -
AA953_RS15885 3176794..3176985 + 192 WP_000457842.1 YebW family protein -
AA953_RS15890 3176986..3177642 - 657 WP_000812724.1 protein-serine/threonine phosphatase -
- 3177739..3178010 + 272 - - Antitoxin
- 3177777..3177880 - 104 - - Toxin
AA953_RS15900 3178038..3178379 - 342 WP_000976476.1 YebY family protein -
AA953_RS15905 3178392..3179264 - 873 WP_000879289.1 copper homeostasis membrane protein CopD -
AA953_RS15910 3179268..3179642 - 375 WP_000168747.1 CopC domain-containing protein YobA -
AA953_RS15915 3179781..3180011 + 231 WP_000916763.1 DNA polymerase III subunit theta -
AA953_RS15920 3180113..3180769 + 657 WP_000011658.1 carbon-nitrogen hydrolase family protein -
AA953_RS15925 3180793..3181455 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T54326 NZ_CP011495:c3177880-3177777 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT54326 NZ_CP011495:3177739-3178010 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References