Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3177739..3178010 | Replicon | chromosome |
| Accession | NZ_CP011495 | ||
| Organism | Escherichia coli strain NCM3722 isolate K-12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3177777..3177880 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3177739..3178010 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA953_RS15875 | 3174896..3176335 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AA953_RS15880 | 3176453..3176689 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AA953_RS15885 | 3176794..3176985 | + | 192 | WP_000457842.1 | YebW family protein | - |
| AA953_RS15890 | 3176986..3177642 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3177739..3178010 | + | 272 | - | - | Antitoxin |
| - | 3177777..3177880 | - | 104 | - | - | Toxin |
| AA953_RS15900 | 3178038..3178379 | - | 342 | WP_000976476.1 | YebY family protein | - |
| AA953_RS15905 | 3178392..3179264 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| AA953_RS15910 | 3179268..3179642 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AA953_RS15915 | 3179781..3180011 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AA953_RS15920 | 3180113..3180769 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AA953_RS15925 | 3180793..3181455 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T54326 NZ_CP011495:c3177880-3177777 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT54326 NZ_CP011495:3177739-3178010 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
