Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4189240..4189511 | Replicon | chromosome |
| Accession | NZ_CP011416 | ||
| Organism | Escherichia coli strain CFSAN029787 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4189370..4189473 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4189240..4189511 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA102_RS21065 | 4185795..4186457 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AA102_RS21070 | 4186481..4187137 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AA102_RS21075 | 4187239..4187469 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AA102_RS21080 | 4187608..4187982 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AA102_RS21085 | 4187986..4188858 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| AA102_RS21090 | 4188871..4189212 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 4189240..4189511 | - | 272 | - | - | Antitoxin |
| - | 4189370..4189473 | + | 104 | - | - | Toxin |
| AA102_RS21100 | 4189608..4190264 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| AA102_RS21105 | 4190265..4190456 | - | 192 | WP_000457842.1 | YebW family protein | - |
| AA102_RS21110 | 4190561..4190797 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AA102_RS21115 | 4190915..4192354 | - | 1440 | WP_024199875.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T54215 NZ_CP011416:4189370-4189473 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT54215 NZ_CP011416:c4189511-4189240 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
