Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 3359980..3360598 Replicon chromosome
Accession NZ_CP011416
Organism Escherichia coli strain CFSAN029787

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag AA102_RS16800 Protein ID WP_001291435.1
Coordinates 3359980..3360198 (-) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag AA102_RS16805 Protein ID WP_000344800.1
Coordinates 3360224..3360598 (-) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AA102_RS16770 3355270..3355842 + 573 WP_000779831.1 YbaY family lipoprotein -
AA102_RS16775 3355873..3356184 - 312 WP_000409911.1 MGMT family protein -
AA102_RS16780 3356563..3356916 + 354 WP_000878140.1 DUF1428 domain-containing protein -
AA102_RS16785 3356958..3358508 - 1551 WP_001299455.1 cyclic-guanylate-specific phosphodiesterase PdeB -
AA102_RS16790 3358672..3359142 - 471 WP_000136192.1 YlaC family protein -
AA102_RS16795 3359258..3359809 - 552 WP_000102564.1 maltose O-acetyltransferase -
AA102_RS16800 3359980..3360198 - 219 WP_001291435.1 hemolysin expression modulator Hha Toxin
AA102_RS16805 3360224..3360598 - 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
AA102_RS16810 3361144..3364293 - 3150 WP_001132469.1 multidrug efflux RND transporter permease subunit -
AA102_RS16815 3364316..3365509 - 1194 WP_001295324.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T54213 WP_001291435.1 NZ_CP011416:c3360198-3359980 [Escherichia coli]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

>T54213 NZ_CP011416:c3360198-3359980 [Escherichia coli]
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACCATGAATAAACTATACGACAAGATCCCTTCCTCAGTATGGAAATTTATTCGCTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT54213 WP_000344800.1 NZ_CP011416:c3360598-3360224 [Escherichia coli]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp

>AT54213 NZ_CP011416:c3360598-3360224 [Escherichia coli]
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACCCTGTATCATGACTGTCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTTAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGCAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References