Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2728136..2728246 Replicon chromosome
Accession NZ_CP011364
Organism Edwardsiella sp. EA181011

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2728143..2728244 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2728136..2728246 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QY76_RS11920 2724004..2727168 - 3165 WP_158409693.1 autotransporter outer membrane beta-barrel domain-containing protein -
- 2728136..2728246 - 111 - - Antitoxin
- 2728143..2728244 + 102 - - Toxin
QY76_RS11925 2728605..2730479 - 1875 WP_045427621.1 PhoX family phosphatase -
QY76_RS11930 2731746..2732161 + 416 Protein_2361 tyrosine-type recombinase/integrase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 102 bp

>T54155 NZ_CP011364:2728143-2728244 [Edwardsiella sp. EA181011]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT

Antitoxin


Download         Length: 111 bp

>AT54155 NZ_CP011364:c2728246-2728136 [Edwardsiella sp. EA181011]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References