Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1714293..1714398 | Replicon | chromosome |
| Accession | NZ_CP011359 | ||
| Organism | Edwardsiella tarda strain FL95-01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1714296..1714398 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1714293..1714398 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAW15_RS16305 | 1710923..1713580 | + | 2658 | WP_052761414.1 | prophage tail fiber N-terminal domain-containing protein | - |
| AAW15_RS17300 | 1713594..1713764 | + | 171 | WP_200900974.1 | hypothetical protein | - |
| - | 1714293..1714398 | + | 106 | - | - | Antitoxin |
| - | 1714296..1714398 | - | 103 | - | - | Toxin |
| AAW15_RS07855 | 1714692..1716206 | + | 1515 | WP_047059848.1 | EAL domain-containing protein | - |
| AAW15_RS07860 | 1716316..1716780 | + | 465 | WP_071842145.1 | hypothetical protein | - |
| AAW15_RS07865 | 1716888..1717694 | - | 807 | WP_052761415.1 | hypothetical protein | - |
| AAW15_RS07870 | 1717802..1718266 | - | 465 | WP_047059852.1 | NifB/NifX family molybdenum-iron cluster-binding protein | - |
| AAW15_RS07875 | 1718279..1718557 | - | 279 | WP_005286287.1 | DUF134 domain-containing protein | - |
| AAW15_RS07880 | 1718626..1719252 | - | 627 | WP_005286281.1 | response regulator transcription factor | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1665008..1716780 | 51772 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T54138 NZ_CP011359:c1714398-1714296 [Edwardsiella tarda]
GGCAAGGCGATCCATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCACAAGAGCCATTCCCCTAGACCTGATACA
GGAATCGTGTCAGGTCTTTTTTT
GGCAAGGCGATCCATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCACAAGAGCCATTCCCCTAGACCTGATACA
GGAATCGTGTCAGGTCTTTTTTT
Antitoxin
Download Length: 106 bp
>AT54138 NZ_CP011359:1714293-1714398 [Edwardsiella tarda]
GATAAAAAAAGACCTGACACGATTCCTGTATCAGGTCTAGGGGAATGGCTCTTGTGGAGAGCCGTGCGCTAAAAGTTGGC
ATTATGCAGGCATGGATCGCCTTGCC
GATAAAAAAAGACCTGACACGATTCCTGTATCAGGTCTAGGGGAATGGCTCTTGTGGAGAGCCGTGCGCTAAAAGTTGGC
ATTATGCAGGCATGGATCGCCTTGCC
