Detailed information of TA system TA054127

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): yxiD-yxxD/-
• Location: 458958..459746
• Replicon: chromosome
• Accession: NZ_CP011347
• Organism: Bacillus velezensis strain YJ11-1-4

Toxin (Protein)

• Gene name: yxiD
• Uniprot ID: -
• Locus tag: AAV30_RS19905
• Protein ID: WP_079891856.1
• Coordinates: 458958..459299 (+)
• Length: 114 a.a.

Antitoxin (Protein)

• Gene name: yxxD
• Uniprot ID: -
• Locus tag: AAV30_RS02330
• Protein ID: WP_038460129.1
• Coordinates: 459309..459746 (+)
• Length: 146 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
AAV30_RS02300	453980..455305	+	1326	WP_038460133.1	UDP-glucose/GDP-mannose dehydrogenase family protein	-
AAV30_RS02305	455369..456157	+	789	WP_051590122.1	DUF1963 domain-containing protein	-
AAV30_RS02310	456439..456873	+	435	WP_007407544.1	DUF5082 domain-containing protein	-
AAV30_RS02315	456873..457133	+	261	WP_007614257.1	YwqI/YxiC family protein	-
AAV30_RS02320	457153..458340	+	1188	Protein_458	ribonuclease YeeF family protein	-
AAV30_RS19905	458958..459299	+	342	WP_079891856.1	HNH endonuclease	Toxin
AAV30_RS02330	459309..459746	+	438	WP_038460129.1	SMI1/KNR4 family protein	Antitoxin
AAV30_RS02335	459917..460114	+	198	Protein_461	SMI1/KNR4 family protein	-
AAV30_RS02340	460198..460914	+	717	WP_038460127.1	endonuclease V	-
AAV30_RS02345	461002..461883	-	882	WP_038460125.1	LysR family transcriptional regulator	-
AAV30_RS02350	462006..462551	+	546	WP_038460123.1	flavodoxin family protein	-
AAV30_RS02355	462548..462766	+	219	WP_017418770.1	hypothetical protein	-
AAV30_RS02360	462793..463329	-	537	WP_038460121.1	chromate resistance efflux protein ChrA	-
AAV30_RS02365	463326..463916	-	591	WP_007407538.1	chromate efflux transporter subunit ChrB	-
AAV30_RS02370	463930..464406	-	477	WP_007407537.1	Lrp/AsnC family transcriptional regulator	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 114 a.a.
• Molecular weight: 13224.74 Da
• Isoelectric Point: 9.6942

>T54127 WP_079891856.1 NZ_CP011347:458958-459299 [Bacillus velezensis]
IKEALRNNNYEKLTPKETAKHRSKFTSSLKDRLIAEWEEKTNQKWPRYTEEVFDKHGEVARSIGQPYDAHHIIENNFGGP
HEWWNIHPAKYPDEHQAGIHGKGAPSGKLFPRR

Nucleotide

• Length: 342 bp

>T54127 NZ_CP011347:458958-459299 [Bacillus velezensis]
ATAAAAGAAGCTTTAAGAAATAATAACTATGAGAAATTAACACCAAAAGAAACAGCTAAGCATAGGAGCAAATTCACATC
AAGTTTGAAAGATAGATTGATTGCAGAATGGGAAGAAAAAACCAATCAAAAGTGGCCTAGATATACAGAAGAGGTTTTTG
ATAAGCATGGAGAAGTTGCCCGAAGTATTGGTCAACCGTACGATGCCCATCATATCATAGAGAACAACTTTGGTGGCCCT
CACGAATGGTGGAATATTCATCCGGCAAAATATCCGGATGAACACCAAGCGGGTATACATGGAAAGGGAGCACCATCAGG
AAAACTTTTTCCAAGGAGGTAA

Antitoxin

Protein

• Length: 146 a.a.
• Molecular weight: 17080.03 Da
• Isoelectric Point: 3.7978

>AT54127 WP_038460129.1 NZ_CP011347:459309-459746 [Bacillus velezensis]
MAEFEFINHLENKTYKVPEEDILKAEQRMNVDIPNDLKQLYLEVGYGFIKGESDNAINRILGPGAVADIRLREGIFEFDP
DLDEIYDDENKLIFFEVNEGVYISIDLQLENNPIFYFDTQIAESLEDFFKKFLNDNEYYIDLIED

Nucleotide

• Length: 438 bp

>AT54127 NZ_CP011347:459309-459746 [Bacillus velezensis]
ATGGCTGAATTTGAATTTATAAATCATTTAGAAAATAAAACATATAAGGTACCTGAAGAGGATATATTAAAAGCTGAACA
AAGAATGAACGTAGATATTCCAAATGATTTAAAACAACTATATTTAGAAGTCGGTTATGGTTTTATTAAAGGTGAAAGTG
ATAATGCAATTAATAGGATATTGGGGCCAGGGGCAGTAGCCGACATTAGACTAAGAGAAGGAATTTTTGAGTTTGACCCA
GATTTAGATGAAATTTATGATGATGAAAATAAACTTATTTTTTTTGAAGTAAACGAGGGTGTTTATATTTCTATAGATTT
ACAATTGGAAAATAATCCAATATTTTATTTTGACACTCAAATAGCTGAATCGTTAGAGGATTTTTTTAAAAAGTTCCTCA
ATGATAACGAATATTATATTGATTTAATTGAGGATTAG