Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1904047..1904318 | Replicon | chromosome |
| Accession | NZ_CP011343 | ||
| Organism | Escherichia coli K-12 substr. GM4792 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1904085..1904188 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1904047..1904318 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U069_RS09505 | 1901204..1902643 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| U069_RS09510 | 1902761..1902997 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| U069_RS09515 | 1903102..1903293 | + | 192 | WP_000457842.1 | YebW family protein | - |
| U069_RS09520 | 1903294..1903950 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1904047..1904318 | + | 272 | - | - | Antitoxin |
| - | 1904085..1904188 | - | 104 | - | - | Toxin |
| U069_RS09530 | 1904346..1904687 | - | 342 | WP_000976476.1 | YebY family protein | - |
| U069_RS09535 | 1904700..1905572 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| U069_RS09540 | 1905576..1905950 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| U069_RS09545 | 1906089..1906319 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| U069_RS09550 | 1906421..1907077 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| U069_RS09555 | 1907101..1907763 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T54100 NZ_CP011343:c1904188-1904085 [Escherichia coli K-12]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT54100 NZ_CP011343:1904047-1904318 [Escherichia coli K-12]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
