Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1904696..1904967 | Replicon | chromosome |
| Accession | NZ_CP011342 | ||
| Organism | Escherichia coli K-12 substr. GM4792 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1904734..1904837 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1904696..1904967 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U068_RS09535 | 1901853..1903292 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| U068_RS09540 | 1903410..1903646 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| U068_RS09545 | 1903751..1903942 | + | 192 | WP_000457842.1 | YebW family protein | - |
| U068_RS09550 | 1903943..1904599 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1904696..1904967 | + | 272 | - | - | Antitoxin |
| - | 1904734..1904837 | - | 104 | - | - | Toxin |
| U068_RS09560 | 1904995..1905336 | - | 342 | WP_000976476.1 | YebY family protein | - |
| U068_RS09565 | 1905349..1906221 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| U068_RS09570 | 1906225..1906599 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| U068_RS09575 | 1906738..1906968 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| U068_RS09580 | 1907070..1907726 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| U068_RS09585 | 1907750..1908412 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T54061 NZ_CP011342:c1904837-1904734 [Escherichia coli K-12]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT54061 NZ_CP011342:1904696-1904967 [Escherichia coli K-12]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
