Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/PIN-PHD |
| Location | 2890977..2891716 | Replicon | chromosome |
| Accession | NZ_CP011339 | ||
| Organism | Microcystis panniformis FACHB-1757 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | VL20_RS13870 | Protein ID | WP_249265012.1 |
| Coordinates | 2890977..2891474 (-) | Length | 166 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | I4ID84 |
| Locus tag | VL20_RS13875 | Protein ID | WP_008201147.1 |
| Coordinates | 2891471..2891716 (-) | Length | 82 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VL20_RS13845 (VL20_3366) | 2886789..2887748 | - | 960 | Protein_2892 | RNA-guided endonuclease TnpB family protein | - |
| VL20_RS13855 (VL20_3367) | 2888102..2889001 | - | 900 | WP_052276832.1 | agmatinase | - |
| VL20_RS13860 (VL20_3368) | 2889660..2889992 | + | 333 | WP_052276833.1 | hypothetical protein | - |
| VL20_RS13865 (VL20_3369) | 2890015..2890443 | + | 429 | WP_052276834.1 | hypothetical protein | - |
| VL20_RS13870 (VL20_3370) | 2890977..2891474 | - | 498 | WP_249265012.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| VL20_RS13875 (VL20_3371) | 2891471..2891716 | - | 246 | WP_008201147.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| VL20_RS13880 | 2891773..2892039 | + | 267 | WP_052276835.1 | DUF433 domain-containing protein | - |
| VL20_RS31190 | 2892020..2892346 | + | 327 | WP_052276836.1 | DUF5615 family PIN-like protein | - |
| VL20_RS31195 | 2892385..2892681 | - | 297 | Protein_2900 | arginase family protein | - |
| VL20_RS32720 (VL20_3374) | 2892668..2892796 | - | 129 | WP_284525783.1 | hypothetical protein | - |
| VL20_RS13890 (VL20_3375) | 2893031..2893258 | + | 228 | WP_052276837.1 | hypothetical protein | - |
| VL20_RS28770 | 2893255..2893528 | + | 274 | Protein_2903 | hypothetical protein | - |
| VL20_RS13895 (VL20_3377) | 2893890..2894519 | + | 630 | WP_128575219.1 | hypothetical protein | - |
| VL20_RS13900 (VL20_3378) | 2894661..2894951 | + | 291 | WP_046661678.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| VL20_RS13905 (VL20_3379) | 2894961..2895251 | + | 291 | WP_002757266.1 | putative addiction module antidote protein | - |
| VL20_RS13910 (VL20_3381) | 2895521..2896321 | + | 801 | WP_052276839.1 | uroporphyrinogen-III C-methyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 166 a.a. Molecular weight: 18604.55 Da Isoelectric Point: 6.7046
>T54042 WP_249265012.1 NZ_CP011339:c2891474-2890977 [Microcystis panniformis FACHB-1757]
VRLLLDTQCWLWWFAQPDKLSENVIEQIANESNEVWFSVASVWEMGIKVSIGKLPLPEQIDNYVSTRMTQLGARSLEINA
SHALRAAALPLHHRDPFDRMLIAQAQVEDMTLVSADSTFNQYEVSLLWAASSGSSRLCVIILAYGILKCLLGKTFRTILR
NKLSV
VRLLLDTQCWLWWFAQPDKLSENVIEQIANESNEVWFSVASVWEMGIKVSIGKLPLPEQIDNYVSTRMTQLGARSLEINA
SHALRAAALPLHHRDPFDRMLIAQAQVEDMTLVSADSTFNQYEVSLLWAASSGSSRLCVIILAYGILKCLLGKTFRTILR
NKLSV
Download Length: 498 bp
>T54042 NZ_CP011339:c2891474-2890977 [Microcystis panniformis FACHB-1757]
GTGAGACTTTTACTGGATACACAATGCTGGCTGTGGTGGTTTGCCCAACCAGACAAGTTAAGTGAGAATGTAATTGAACA
AATTGCCAACGAAAGCAATGAAGTGTGGTTTTCTGTTGCCAGTGTTTGGGAGATGGGAATTAAAGTCTCAATCGGTAAAT
TACCACTGCCAGAGCAAATAGATAATTATGTCTCTACTCGAATGACCCAACTAGGAGCTAGATCGTTAGAGATCAATGCT
TCTCATGCTTTGCGGGCGGCTGCATTGCCTTTACATCATCGTGATCCTTTTGACCGAATGCTGATTGCACAAGCTCAGGT
AGAAGATATGACACTTGTGAGTGCGGATTCAACATTTAATCAATATGAAGTGTCTTTGCTTTGGGCAGCTAGTTCTGGCT
CTTCTCGACTTTGTGTGATAATTTTGGCTTATGGAATCCTGAAGTGCTTATTGGGCAAAACTTTTAGGACTATTTTGCGG
AATAAACTATCAGTATAG
GTGAGACTTTTACTGGATACACAATGCTGGCTGTGGTGGTTTGCCCAACCAGACAAGTTAAGTGAGAATGTAATTGAACA
AATTGCCAACGAAAGCAATGAAGTGTGGTTTTCTGTTGCCAGTGTTTGGGAGATGGGAATTAAAGTCTCAATCGGTAAAT
TACCACTGCCAGAGCAAATAGATAATTATGTCTCTACTCGAATGACCCAACTAGGAGCTAGATCGTTAGAGATCAATGCT
TCTCATGCTTTGCGGGCGGCTGCATTGCCTTTACATCATCGTGATCCTTTTGACCGAATGCTGATTGCACAAGCTCAGGT
AGAAGATATGACACTTGTGAGTGCGGATTCAACATTTAATCAATATGAAGTGTCTTTGCTTTGGGCAGCTAGTTCTGGCT
CTTCTCGACTTTGTGTGATAATTTTGGCTTATGGAATCCTGAAGTGCTTATTGGGCAAAACTTTTAGGACTATTTTGCGG
AATAAACTATCAGTATAG
Antitoxin
Download Length: 82 a.a. Molecular weight: 8950.20 Da Isoelectric Point: 4.7361
>AT54042 WP_008201147.1 NZ_CP011339:c2891716-2891471 [Microcystis panniformis FACHB-1757]
METVNIHQAKTNLSRLLSRVELGEEIVISNRGIPIAKLVPFRTSLDRRSSLGQDRGMFTVPDDFNAPLPEDILVAFEGGA
E
METVNIHQAKTNLSRLLSRVELGEEIVISNRGIPIAKLVPFRTSLDRRSSLGQDRGMFTVPDDFNAPLPEDILVAFEGGA
E
Download Length: 246 bp
>AT54042 NZ_CP011339:c2891716-2891471 [Microcystis panniformis FACHB-1757]
ATGGAAACTGTAAACATTCATCAGGCTAAAACAAACCTTTCTCGGCTATTGTCCCGTGTGGAACTCGGAGAGGAAATCGT
TATTTCAAACCGAGGTATTCCAATTGCTAAACTTGTTCCATTTCGGACATCTTTAGATCGACGGTCTAGTTTAGGACAAG
ATCGAGGGATGTTTACCGTACCAGATGATTTTAATGCCCCTTTACCAGAAGATATTTTGGTAGCATTTGAGGGTGGTGCG
GAGTGA
ATGGAAACTGTAAACATTCATCAGGCTAAAACAAACCTTTCTCGGCTATTGTCCCGTGTGGAACTCGGAGAGGAAATCGT
TATTTCAAACCGAGGTATTCCAATTGCTAAACTTGTTCCATTTCGGACATCTTTAGATCGACGGTCTAGTTTAGGACAAG
ATCGAGGGATGTTTACCGTACCAGATGATTTTAATGCCCCTTTACCAGAAGATATTTTGGTAGCATTTGAGGGTGGTGCG
GAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|