Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1533152..1533423 | Replicon | chromosome |
| Accession | NZ_CP011331 | ||
| Organism | Escherichia coli O104:H4 str. C227-11 isolate 368 shch | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1533282..1533385 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1533152..1533423 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAF13_RS07655 | 1529707..1530369 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AAF13_RS07660 | 1530393..1531049 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AAF13_RS07665 | 1531151..1531381 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AAF13_RS07670 | 1531520..1531894 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AAF13_RS07675 | 1531898..1532770 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| AAF13_RS07680 | 1532783..1533124 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1533152..1533423 | - | 272 | - | - | Antitoxin |
| - | 1533282..1533385 | + | 104 | - | - | Toxin |
| AAF13_RS07690 | 1533520..1534176 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| AAF13_RS07695 | 1534177..1534368 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AAF13_RS07700 | 1534473..1534709 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AAF13_RS07705 | 1534827..1536266 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T54011 NZ_CP011331:1533282-1533385 [Escherichia coli O104:H4 str. C227-11]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT54011 NZ_CP011331:c1533423-1533152 [Escherichia coli O104:H4 str. C227-11]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
