Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1915553..1915824 | Replicon | chromosome |
| Accession | NZ_CP011321 | ||
| Organism | Escherichia coli strain SQ88 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1915591..1915694 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1915553..1915824 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SG49_RS09570 | 1912710..1914149 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| SG49_RS09575 | 1914267..1914503 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| SG49_RS09580 | 1914608..1914799 | + | 192 | WP_000457842.1 | YebW family protein | - |
| SG49_RS09585 | 1914800..1915456 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1915553..1915824 | + | 272 | - | - | Antitoxin |
| - | 1915591..1915694 | - | 104 | - | - | Toxin |
| SG49_RS09595 | 1915852..1916193 | - | 342 | WP_000976476.1 | YebY family protein | - |
| SG49_RS09600 | 1916206..1917078 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| SG49_RS09605 | 1917082..1917456 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| SG49_RS09610 | 1917595..1917825 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| SG49_RS09615 | 1917927..1918583 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| SG49_RS09620 | 1918607..1919269 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T53888 NZ_CP011321:c1915694-1915591 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT53888 NZ_CP011321:1915553-1915824 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
