Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3033558..3033676 | Replicon | chromosome |
| Accession | NZ_CP011303 | ||
| Organism | Serratia liquefaciens strain HUMV-21 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3033558..3033654 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3033558..3033676 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XJ20_RS14145 | 3030454..3030918 | + | 465 | WP_046373895.1 | phage tail protein | - |
| XJ20_RS14150 | 3030915..3032012 | + | 1098 | WP_046373896.1 | phage late control D family protein | - |
| XJ20_RS25200 | 3032086..3032304 | + | 219 | WP_071844562.1 | ogr/Delta-like zinc finger family protein | - |
| XJ20_RS14155 | 3032424..3033512 | + | 1089 | WP_046373897.1 | tyrosine-type recombinase/integrase | - |
| - | 3033558..3033654 | - | 97 | - | - | Toxin |
| - | 3033558..3033676 | + | 119 | - | - | Antitoxin |
| XJ20_RS14160 | 3033796..3034137 | - | 342 | WP_020826380.1 | YebY family protein | - |
| XJ20_RS14165 | 3034207..3035088 | - | 882 | WP_046373898.1 | copper homeostasis membrane protein CopD | - |
| XJ20_RS14170 | 3035092..3035475 | - | 384 | WP_020826378.1 | CopC domain-containing protein YobA | - |
| XJ20_RS14175 | 3035791..3036309 | - | 519 | WP_020826377.1 | non-heme ferritin | - |
| XJ20_RS14180 | 3036682..3036912 | + | 231 | WP_020826376.1 | DNA polymerase III subunit theta | - |
| XJ20_RS14185 | 3036943..3037896 | - | 954 | WP_020826375.1 | prolyl aminopeptidase | - |
| XJ20_RS14190 | 3038069..3038494 | - | 426 | WP_020826374.1 | RNA polymerase-binding protein DksA | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2992992..3039601 | 46609 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T53794 NZ_CP011303:c3033654-3033558 [Serratia liquefaciens]
AACAAGCCTTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCTTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT53794 NZ_CP011303:3033558-3033676 [Serratia liquefaciens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTTGTGCAAGGCTTGTTCAGCCGTGCACTTTAAGAGTAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTTGTGCAAGGCTTGTTCAGCCGTGCACTTTAAGAGTAG
