Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | hicAB/- |
Location | 16525..17117 | Replicon | plasmid unnamed2 |
Accession | NZ_CP011294 | ||
Organism | Salmonella enterica subsp. diarizonae strain 11-01854 |
Toxin (Protein)
Gene name | hicA | Uniprot ID | A0A1I9ZJC5 |
Locus tag | UQ49_RS22725 | Protein ID | WP_000513532.1 |
Coordinates | 16869..17117 (-) | Length | 83 a.a. |
Antitoxin (Protein)
Gene name | hicB | Uniprot ID | A0A1I9ZJ49 |
Locus tag | UQ49_RS22720 | Protein ID | WP_000681609.1 |
Coordinates | 16525..16872 (-) | Length | 116 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
UQ49_RS22680 | 11816..12157 | - | 342 | WP_000730722.1 | plasmid mobilization relaxosome protein MobC | - |
UQ49_RS22685 | 12526..12927 | + | 402 | WP_021575837.1 | hypothetical protein | - |
UQ49_RS22690 | 12945..13697 | + | 753 | WP_000797966.1 | conjugal transfer protein TraL | - |
UQ49_RS22695 | 13699..14406 | + | 708 | WP_063390999.1 | hypothetical protein | - |
UQ49_RS22700 | 14507..14866 | + | 360 | WP_024147837.1 | hypothetical protein | - |
UQ49_RS22705 | 14868..15194 | + | 327 | WP_000206697.1 | hypothetical protein | - |
UQ49_RS22710 | 15454..15753 | - | 300 | WP_000466320.1 | type II toxin-antitoxin system HicB family antitoxin | - |
UQ49_RS22715 | 16255..16437 | + | 183 | WP_001428470.1 | hypothetical protein | - |
UQ49_RS22720 | 16525..16872 | - | 348 | WP_000681609.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
UQ49_RS22725 | 16869..17117 | - | 249 | WP_000513532.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
UQ49_RS22730 | 17582..17860 | - | 279 | WP_000545937.1 | hypothetical protein | - |
UQ49_RS22740 | 18409..18660 | - | 252 | WP_052989132.1 | transcriptional regulator | - |
UQ49_RS22745 | 18650..18910 | - | 261 | WP_000702245.1 | hypothetical protein | - |
UQ49_RS22750 | 18962..19186 | - | 225 | WP_000814383.1 | hypothetical protein | - |
UQ49_RS22755 | 19284..19493 | - | 210 | WP_000866037.1 | hypothetical protein | - |
UQ49_RS22760 | 19534..19857 | - | 324 | WP_000427402.1 | hypothetical protein | - |
UQ49_RS22770 | 20436..20765 | - | 330 | WP_000855121.1 | hypothetical protein | - |
UQ49_RS22780 | 21364..22029 | + | 666 | WP_000532148.1 | P-loop NTPase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | - | 1..57955 | 57955 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 83 a.a. Molecular weight: 12233.67 Da Isoelectric Point: 5.5500
>T53783 WP_000513532.1 NZ_CP011294:c17117-16869 [Salmonella enterica subsp. diarizonae]
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Download Length: 249 bp
>T53783 NZ_CP011294:c17117-16869 [Salmonella enterica subsp. diarizonae]
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Antitoxin
Download Length: 116 a.a. Molecular weight: 17090.50 Da Isoelectric Point: 5.5500
>AT53783 WP_000681609.1 NZ_CP011294:c16872-16525 [Salmonella enterica subsp. diarizonae]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
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Download Length: 348 bp
>AT53783 NZ_CP011294:c16872-16525 [Salmonella enterica subsp. diarizonae]
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Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1I9ZJC5 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1I9ZJ49 |