Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2519196..2519314 | Replicon | chromosome |
| Accession | NZ_CP011286 | ||
| Organism | Yersinia enterocolitica strain KNG22703 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2519198..2519292 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2519196..2519314 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XM56_RS11380 | 2515024..2515476 | + | 453 | WP_005163578.1 | phage tail protein | - |
| XM56_RS11385 | 2515473..2516615 | + | 1143 | WP_013649998.1 | phage late control D family protein | - |
| XM56_RS21450 | 2516708..2516929 | + | 222 | WP_071822716.1 | DNA-binding transcriptional regulator | - |
| XM56_RS11390 | 2517014..2517829 | - | 816 | WP_005163581.1 | hypothetical protein | - |
| XM56_RS11395 | 2518142..2519140 | + | 999 | WP_032904249.1 | tyrosine-type recombinase/integrase | - |
| - | 2519196..2519314 | + | 119 | - | - | Antitoxin |
| - | 2519198..2519292 | - | 95 | - | - | Toxin |
| XM56_RS11400 | 2519467..2519808 | - | 342 | WP_005163587.1 | YebY family protein | - |
| XM56_RS11405 | 2519905..2520789 | - | 885 | WP_005163602.1 | copper homeostasis membrane protein CopD | - |
| XM56_RS11410 | 2520791..2521177 | - | 387 | WP_005170441.1 | CopC domain-containing protein YobA | - |
| XM56_RS11415 | 2521570..2522079 | - | 510 | WP_013650000.1 | non-heme ferritin | - |
| XM56_RS11420 | 2522463..2522696 | + | 234 | WP_004389928.1 | DNA polymerase III subunit theta | - |
| XM56_RS11425 | 2522746..2523702 | - | 957 | WP_020283091.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2509853..2524874 | 15021 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 bp
>T53763 NZ_CP011286:c2519292-2519198 [Yersinia enterocolitica]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT53763 NZ_CP011286:2519196-2519314 [Yersinia enterocolitica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
