Detailed information of TA system TA053704

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-StbC
• Location: 203051..203721
• Replicon: plasmid pAt
• Accession: NZ_CP011248
• Organism: Agrobacterium fabacearum strain Ach5

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: Ach5_RS24175
• Protein ID: WP_003517201.1
• Coordinates: 203302..203721 (+)
• Length: 140 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: A0A7U5CZ71
• Locus tag: Ach5_RS24170
• Protein ID: WP_038496682.1
• Coordinates: 203051..203305 (+)
• Length: 85 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
Ach5_RS24160	200802..202021	+	1220	WP_121556223.1	IS3 family transposase	-
Ach5_RS24165	202078..202683	-	606	WP_035201472.1	J domain-containing protein	-
Ach5_RS24170	203051..203305	+	255	WP_038496682.1	plasmid stabilization protein	Antitoxin
Ach5_RS24175	203302..203721	+	420	WP_003517201.1	type II toxin-antitoxin system VapC family toxin	Toxin
Ach5_RS24180	203948..204844	-	897	WP_038496685.1	dihydrodipicolinate synthase family protein	-
Ach5_RS24185	204877..205758	-	882	WP_038496688.1	SMP-30/gluconolactonase/LRE family protein	-
Ach5_RS24190	205815..206534	-	720	WP_038496691.1	FadR family transcriptional regulator	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Non-Mobilizable plasmid	-	-	1..544752	544752

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 140 a.a.
• Molecular weight: 17962.39 Da
• Isoelectric Point: 12.9430

>T53704 WP_003517201.1 NZ_CP011248:203302-203721 [Agrobacterium fabacearum]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Nucleotide

• Length: 420 bp

>T53704 NZ_CP011248:203302-203721 [Agrobacterium fabacearum]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

Antitoxin

Protein

• Length: 85 a.a.
• Molecular weight: 10912.81 Da
• Isoelectric Point: 12.7242

>AT53704 WP_038496682.1 NZ_CP011248:203051-203305 [Agrobacterium fabacearum]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKK

Nucleotide

• Length: 255 bp

>AT53704 NZ_CP011248:203051-203305 [Agrobacterium fabacearum]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

Structures

Antitoxin

• AlphaFold DB: A0A7U5CZ71