Detailed information of TA system TA053702

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VagC
• Location: 5078..5709
• Replicon: plasmid pAt
• Accession: NZ_CP011248
• Organism: Agrobacterium fabacearum strain Ach5

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: Ach5_RS23175
• Protein ID: WP_038496209.1
• Coordinates: 5078..5479 (-)
• Length: 134 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: -
• Locus tag: Ach5_RS23180
• Protein ID: WP_003519381.1
• Coordinates: 5479..5709 (-)
• Length: 77 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
Ach5_RS23145	180..1463	+	1284	WP_025591772.1	plasmid partitioning protein RepA	-
Ach5_RS23150	1460..2485	+	1026	WP_038496201.1	plasmid partitioning protein RepB	-
Ach5_RS23155	2688..3902	+	1215	WP_038496203.1	replication initiation protein RepC	-
Ach5_RS23165	4112..4405	-	294	WP_038496206.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	-
Ach5_RS28070	4784..5002	+	219	WP_038497375.1	BrnA antitoxin family protein	-
Ach5_RS23175	5078..5479	-	402	WP_038496209.1	tRNA(fMet)-specific endonuclease VapC	Toxin
Ach5_RS23180	5479..5709	-	231	WP_003519381.1	antitoxin	Antitoxin
Ach5_RS28630	6494..6634	-	141	WP_003518781.1	hypothetical protein	-
Ach5_RS23190	7005..7775	-	771	WP_038496212.1	4-hydroxy-2-oxoheptanedioate aldolase	-
Ach5_RS23195	7783..8565	-	783	WP_038496215.1	2-oxo-hepta-3-ene-1,7-dioic acid hydratase	-
Ach5_RS23200	8585..9478	-	894	WP_038496218.1	intradiol ring-cleavage dioxygenase	-
Ach5_RS23205	9724..10458	+	735	WP_038496221.1	GntR family transcriptional regulator	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Non-Mobilizable plasmid	-	-	1..544752	544752

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 134 a.a.
• Molecular weight: 19739.68 Da
• Isoelectric Point: 5.5500

>T53702 WP_038496209.1 NZ_CP011248:c5479-5078 [Agrobacterium fabacearum]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF

Nucleotide

• Length: 402 bp

>T53702 NZ_CP011248:c5479-5078 [Agrobacterium fabacearum]
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TT

Antitoxin

Protein

• Length: 77 a.a.
• Molecular weight: 11350.61 Da
• Isoelectric Point: 5.5500

>AT53702 WP_003519381.1 NZ_CP011248:c5709-5479 [Agrobacterium fabacearum]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF

Nucleotide

• Length: 231 bp

>AT53702 NZ_CP011248:c5709-5479 [Agrobacterium fabacearum]
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT