Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2000125..2000396 | Replicon | chromosome |
| Accession | NZ_CP011134 | ||
| Organism | Escherichia coli VR50 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2000163..2000266 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2000125..2000396 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECVR50_RS09995 | 1997282..1998721 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECVR50_RS10000 | 1998839..1999075 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECVR50_RS10005 | 1999180..1999371 | + | 192 | WP_000457842.1 | YebW family protein | - |
| ECVR50_RS10010 | 1999372..2000028 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2000125..2000396 | + | 272 | - | - | Antitoxin |
| - | 2000163..2000266 | - | 104 | - | - | Toxin |
| ECVR50_RS10020 | 2000424..2000765 | - | 342 | WP_000976466.1 | YebY family protein | - |
| ECVR50_RS10025 | 2000778..2001650 | - | 873 | WP_001673478.1 | copper homeostasis membrane protein CopD | - |
| ECVR50_RS10030 | 2001654..2002028 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECVR50_RS10035 | 2002167..2002397 | + | 231 | WP_046072843.1 | DNA polymerase III subunit theta | - |
| ECVR50_RS10040 | 2002499..2003155 | + | 657 | WP_000011662.1 | carbon-nitrogen hydrolase family protein | - |
| ECVR50_RS10045 | 2003179..2003841 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T53533 NZ_CP011134:c2000266-2000163 [Escherichia coli VR50]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT53533 NZ_CP011134:2000125-2000396 [Escherichia coli VR50]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
