Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1972242..1972384 | Replicon | chromosome |
| Accession | NZ_CP011132 | ||
| Organism | Citrobacter amalonaticus Y19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1972246..1972349 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1972242..1972384 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F384_RS08850 | 1967836..1968072 | + | 237 | WP_162200265.1 | DUF1480 family protein | - |
| F384_RS08855 | 1968174..1968365 | + | 192 | WP_046481154.1 | YebW family protein | - |
| F384_RS08860 | 1968366..1969028 | - | 663 | WP_046481155.1 | protein-serine/threonine phosphatase | - |
| F384_RS28235 | 1969801..1971777 | + | 1977 | WP_046481157.1 | acyltransferase | - |
| - | 1972242..1972384 | + | 143 | - | - | Antitoxin |
| - | 1972246..1972349 | - | 104 | - | - | Toxin |
| F384_RS08875 | 1972505..1972843 | - | 339 | WP_046481158.1 | YebY family protein | - |
| F384_RS08880 | 1972860..1973732 | - | 873 | WP_046481159.1 | copper homeostasis membrane protein CopD | - |
| F384_RS08885 | 1973735..1974109 | - | 375 | WP_046481160.1 | CopC domain-containing protein YobA | - |
| F384_RS08890 | 1974247..1974477 | + | 231 | WP_046481161.1 | DNA polymerase III subunit theta | - |
| F384_RS08895 | 1974587..1975243 | + | 657 | WP_046481162.1 | carbon-nitrogen hydrolase family protein | - |
| F384_RS08900 | 1975267..1975929 | + | 663 | WP_046481163.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T53514 NZ_CP011132:c1972349-1972246 [Citrobacter amalonaticus Y19]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT53514 NZ_CP011132:1972242-1972384 [Citrobacter amalonaticus Y19]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
