Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2950706..2950977 | Replicon | chromosome |
| Accession | NZ_CP011124 | ||
| Organism | Escherichia coli strain USML2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2950836..2950939 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2950706..2950977 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| USML2_RS14895 | 2947261..2947923 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| USML2_RS14900 | 2947947..2948603 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| USML2_RS14905 | 2948705..2948935 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| USML2_RS14910 | 2949074..2949448 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| USML2_RS14915 | 2949452..2950324 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| USML2_RS14920 | 2950337..2950678 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2950706..2950977 | - | 272 | - | - | Antitoxin |
| - | 2950836..2950939 | + | 104 | - | - | Toxin |
| USML2_RS14925 | 2951074..2951730 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| USML2_RS14930 | 2951731..2951922 | - | 192 | WP_000457842.1 | YebW family protein | - |
| USML2_RS14935 | 2952027..2952263 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| USML2_RS14940 | 2952381..2953820 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T53495 NZ_CP011124:2950836-2950939 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT53495 NZ_CP011124:c2950977-2950706 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
