Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 112292..112674 Replicon plasmid unnamed2
Accession NZ_CP011122
Organism Acetobacter oryzifermentans strain SLV-7

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag WG31_RS15885 Protein ID WP_099540392.1
Coordinates 112292..112447 (-) Length 52 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag WG31_RS15890 Protein ID WP_035363099.1
Coordinates 112432..112674 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
WG31_RS14570 107409..108728 + 1320 WP_003626803.1 replication protein C -
WG31_RS14575 108882..109175 + 294 WP_003626805.1 hypothetical protein -
WG31_RS14580 109172..110218 + 1047 WP_020936732.1 Fic family protein -
WG31_RS15355 110231..110654 - 424 Protein_114 hypothetical protein -
WG31_RS15720 110629..111147 - 519 WP_020936730.1 hypothetical protein -
WG31_RS14595 111159..112289 - 1131 WP_020936729.1 hypothetical protein -
WG31_RS15885 112292..112447 - 156 WP_099540392.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
WG31_RS15890 112432..112674 - 243 WP_035363099.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
WG31_RS14605 112805..113311 - 507 WP_003627485.1 hypothetical protein -
WG31_RS14610 113337..113717 - 381 WP_003627483.1 hypothetical protein -
WG31_RS14615 113705..113989 - 285 WP_035362983.1 hypothetical protein -
WG31_RS14620 114424..115848 - 1425 WP_063355062.1 AAA family ATPase -
WG31_RS15670 116126..116227 - 102 Protein_123 IS5/IS1182 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..116245 116245


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-39)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-69)


Sequences

Toxin        


Download         Length: 52 a.a.        Molecular weight: 5836.76 Da        Isoelectric Point: 10.5191

>T53478 WP_099540392.1 NZ_CP011122:c112447-112292 [Acetobacter oryzifermentans]
IGRSVSCYKIKRRASGYRLVYQVHDGKLIVLVVAIGRRDANEVYDDATRRV

Download         Length: 156 bp

>T53478 NZ_CP011122:c112447-112292 [Acetobacter oryzifermentans]
ATTGGACGATCTGTGAGCTGCTATAAAATCAAACGTCGAGCTTCCGGATACCGGCTGGTGTATCAGGTTCATGACGGGAA
ACTCATAGTGCTGGTTGTTGCGATTGGACGCAGGGATGCCAATGAGGTTTACGACGATGCAACCCGCCGCGTCTGA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8782.07 Da        Isoelectric Point: 4.5258

>AT53478 WP_035363099.1 NZ_CP011122:c112674-112432 [Acetobacter oryzifermentans]
MASINLRIDDSLKKAAYDRLSELGVTPSDLIRQTFEYVVATGKLPVRRTVVSDDGLELLGVVRERLASPEPSLPVSLDDL

Download         Length: 243 bp

>AT53478 NZ_CP011122:c112674-112432 [Acetobacter oryzifermentans]
ATGGCTTCAATTAACCTGCGCATCGATGACAGTCTGAAGAAAGCGGCCTACGATCGTCTGTCAGAACTCGGCGTGACACC
CTCAGATCTCATCCGCCAGACCTTTGAATATGTCGTCGCTACTGGCAAGCTCCCTGTCCGGCGCACTGTTGTATCGGATG
ACGGTCTGGAGCTCCTTGGCGTCGTTCGAGAGCGTCTTGCCTCGCCTGAACCGTCTCTTCCGGTTTCATTGGACGATCTG
TGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References