Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 80322..80704 Replicon plasmid unnamed2
Accession NZ_CP011122
Organism Acetobacter oryzifermentans strain SLV-7

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag WG31_RS15650 Protein ID WP_081939029.1
Coordinates 80322..80477 (-) Length 52 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag WG31_RS14445 Protein ID WP_061342401.1
Coordinates 80462..80704 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
WG31_RS15640 75470..75607 + 138 WP_157884548.1 hypothetical protein -
WG31_RS14430 75936..78017 + 2082 WP_063355061.1 NgoFVII family restriction endonuclease -
WG31_RS15300 78312..78616 + 305 Protein_78 type II toxin-antitoxin system PemK/MazF family toxin -
WG31_RS15645 78666..79220 + 555 Protein_79 cell filamentation protein Fic -
WG31_RS14440 79233..80319 - 1087 Protein_80 hypothetical protein -
WG31_RS15650 80322..80477 - 156 WP_081939029.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
WG31_RS14445 80462..80704 - 243 WP_061342401.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
WG31_RS14450 80975..81307 + 333 WP_020936752.1 type II toxin-antitoxin system PrlF family antitoxin -
WG31_RS14455 81310..81801 + 492 WP_020936751.1 type II toxin-antitoxin system YhaV family toxin -
WG31_RS14460 82372..82821 + 450 WP_003626877.1 hypothetical protein -
WG31_RS14465 83086..83439 + 354 WP_035362748.1 protease inhibitor I42 family protein -
WG31_RS14470 83995..84240 + 246 WP_019092505.1 type II toxin-antitoxin system prevent-host-death family antitoxin -
WG31_RS15320 84660..84830 + 171 WP_099541955.1 transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..116245 116245


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-39)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-69)


Sequences

Toxin        


Download         Length: 52 a.a.        Molecular weight: 5850.79 Da        Isoelectric Point: 10.5191

>T53477 WP_081939029.1 NZ_CP011122:c80477-80322 [Acetobacter oryzifermentans]
IGRSVSCYKIKRRASGYRLVYQVHEGKLIVLVVAIGRRDANEVYDDATRRV

Download         Length: 156 bp

>T53477 NZ_CP011122:c80477-80322 [Acetobacter oryzifermentans]
ATTGGACGATCTGTGAGCTGCTATAAAATCAAACGTCGAGCTTCCGGATATCGGCTGGTGTATCAGGTTCATGAGGGGAA
ACTCATAGTGCTGGTTGTTGCGATTGGACGCAGGGATGCCAATGAGGTTTACGACGATGCAACCCGCCGCGTCTGA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8796.09 Da        Isoelectric Point: 4.5258

>AT53477 WP_061342401.1 NZ_CP011122:c80704-80462 [Acetobacter oryzifermentans]
MASINLRIDDSLKKAAYDRLSELGVTPSDLIRQTFEYVVATGKLPVRRTVVSDDGLELLAVVRERLASPEPSLPVSLDDL

Download         Length: 243 bp

>AT53477 NZ_CP011122:c80704-80462 [Acetobacter oryzifermentans]
ATGGCTTCAATTAACCTGCGCATCGATGACAGTCTGAAGAAAGCGGCCTACGATCGTCTGTCAGAACTCGGCGTGACACC
CTCAGATCTCATCCGCCAGACCTTTGAATATGTCGTCGCTACTGGCAAGCTCCCTGTCCGGCGCACTGTTGTATCGGATG
ACGGTCTGGAGCTCCTTGCCGTCGTTCGAGAGCGTCTTGCCTCGCCTGAACCGTCTCTTCCGGTTTCATTGGACGATCTG
TGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References