Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/UPF0150(antitoxin)
Location 1470390..1471028 Replicon chromosome
Accession NZ_CP011113
Organism Escherichia coli strain RR1

Toxin (Protein)


Gene name hicA Uniprot ID S1F9G9
Locus tag SR35_RS07840 Protein ID WP_000813794.1
Coordinates 1470390..1470566 (+) Length 59 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID -
Locus tag SR35_RS07845 Protein ID WP_001270286.1
Coordinates 1470612..1471028 (+) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SR35_RS07820 1466009..1467223 - 1215 WP_001326689.1 BenE family transporter YdcO -
SR35_RS07825 1467276..1467812 + 537 WP_000429155.1 DNA-binding transcriptional regulator SutR -
SR35_RS07830 1467885..1469846 + 1962 WP_001303492.1 23S rRNA 5-hydroxycytidine C2501 synthase -
SR35_RS07835 1469938..1470168 - 231 WP_000494244.1 YncJ family protein -
SR35_RS07840 1470390..1470566 + 177 WP_000813794.1 type II toxin-antitoxin system mRNA interferase toxin HicA Toxin
SR35_RS07845 1470612..1471028 + 417 WP_001270286.1 type II toxin-antitoxin system antitoxin HicB Antitoxin
SR35_RS07850 1471107..1472513 + 1407 WP_000760626.1 PLP-dependent aminotransferase family protein -
SR35_RS07855 1472758..1473903 + 1146 WP_000047424.1 ABC transporter substrate-binding protein -
SR35_RS07860 1473921..1474934 + 1014 WP_000220396.1 ABC transporter ATP-binding protein -
SR35_RS07865 1474935..1475876 + 942 WP_001251304.1 ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(5-57)

Antitoxin

Cro/C1-type helix-turn-helix domain

(91-134)


Sequences

Toxin        


Download         Length: 59 a.a.        Molecular weight: 6749.83 Da        Isoelectric Point: 11.2298

>T53403 WP_000813794.1 NZ_CP011113:1470390-1470566 [Escherichia coli]
VKQSEFRRWLESQGVDVANGSNHLKLRFHGRRSVMPRHPCDEIKEPLRKAILKQLGLS

Download         Length: 177 bp

>T53403 NZ_CP011113:1470390-1470566 [Escherichia coli]
GTGAAACAAAGCGAGTTCAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAG
GTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC
AACTCGGTTTGAGTTAA

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15246.63 Da        Isoelectric Point: 4.7386

>AT53403 WP_001270286.1 NZ_CP011113:1470612-1471028 [Escherichia coli]
MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKV
LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV

Download         Length: 417 bp

>AT53403 NZ_CP011113:1470612-1471028 [Escherichia coli]
ATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGAC
CCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATA
ACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTA
TTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAGGAGAT
TACTCGCCTATTTAACTTGCATCATGCGACAAAAATCGACGCCGTCCAGCTCGCGGCAAAGGCGCTTGGCAAAGAGTTAT
CGCTGGTGATGGTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6HPB

Antitoxin

Source ID Structure

References