Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 646333..646481 | Replicon | chromosome |
| Accession | NZ_CP011078 | ||
| Organism | Yersinia ruckeri strain Big Creek 74 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 646339..646432 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 646333..646481 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UGYR_RS02925 | 643085..643570 | + | 486 | WP_038276623.1 | phage tail protein | - |
| UGYR_RS02930 | 643567..644733 | + | 1167 | WP_045844131.1 | phage late control D family protein | - |
| UGYR_RS02935 | 644827..645045 | + | 219 | WP_045844132.1 | DNA-binding transcriptional regulator | - |
| UGYR_RS02940 | 645211..646296 | + | 1086 | WP_186368419.1 | tyrosine-type recombinase/integrase | - |
| - | 646333..646481 | + | 149 | - | - | Antitoxin |
| - | 646339..646432 | - | 94 | - | - | Toxin |
| UGYR_RS02945 | 646591..646932 | - | 342 | WP_004721721.1 | YebY family protein | - |
| UGYR_RS02950 | 647027..647911 | - | 885 | WP_045844133.1 | copper homeostasis membrane protein CopD | - |
| UGYR_RS02955 | 647913..648299 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| UGYR_RS02960 | 648704..649219 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| UGYR_RS02965 | 649622..649852 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| UGYR_RS02970 | 649975..650925 | - | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 615417..649852 | 34435 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T53311 NZ_CP011078:c646432-646339 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 149 bp
>AT53311 NZ_CP011078:646333-646481 [Yersinia ruckeri]
ACAAATAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGT
TGGCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
ACAAATAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGT
TGGCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
