Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2841820..2841962 | Replicon | chromosome |
| Accession | NZ_CP011077 | ||
| Organism | Klebsiella michiganensis strain RC10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2841824..2841927 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2841820..2841962 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VW41_RS13160 | 2837298..2837537 | + | 240 | WP_045782920.1 | YebV family protein | - |
| VW41_RS13165 | 2837778..2837969 | + | 192 | WP_045782921.1 | YebW family protein | - |
| VW41_RS13170 | 2837986..2838519 | - | 534 | WP_187107606.1 | GNAT family N-acetyltransferase | - |
| VW41_RS13175 | 2838534..2839781 | - | 1248 | WP_045782923.1 | MFS transporter | - |
| VW41_RS13180 | 2840037..2841533 | - | 1497 | WP_045782924.1 | SulP family inorganic anion transporter | - |
| - | 2841820..2841962 | + | 143 | - | - | Antitoxin |
| - | 2841824..2841927 | - | 104 | - | - | Toxin |
| VW41_RS13185 | 2842075..2842419 | - | 345 | WP_045782925.1 | YebY family protein | - |
| VW41_RS13190 | 2842448..2843323 | - | 876 | WP_045782926.1 | copper homeostasis membrane protein CopD | - |
| VW41_RS13195 | 2843329..2843703 | - | 375 | WP_045782927.1 | CopC domain-containing protein YobA | - |
| VW41_RS13200 | 2843845..2844075 | + | 231 | WP_045782928.1 | DNA polymerase III subunit theta | - |
| VW41_RS13205 | 2844205..2844933 | + | 729 | WP_045782929.1 | carbon-nitrogen hydrolase family protein | - |
| VW41_RS13210 | 2844963..2845634 | + | 672 | WP_045782930.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T53298 NZ_CP011077:c2841927-2841824 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 143 bp
>AT53298 NZ_CP011077:2841820-2841962 [Klebsiella michiganensis]
GATAAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTCTTAAGAATAGATTACCGGCGCAGGTTTTCCAGT
GATAAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTCTTAAGAATAGATTACCGGCGCAGGTTTTCCAGT
