Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2801616..2801784 | Replicon | chromosome |
| Accession | NZ_CP011047 | ||
| Organism | Cronobacter sakazakii strain ATCC 29544 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2801678..2801781 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2801616..2801784 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSK29544_RS13360 | 2796767..2798830 | + | 2064 | WP_007900686.1 | oligopeptidase B | - |
| CSK29544_RS13365 | 2798827..2799489 | - | 663 | WP_007775901.1 | exodeoxyribonuclease X | - |
| CSK29544_RS13370 | 2799561..2799791 | - | 231 | WP_007698883.1 | DNA polymerase III subunit theta | - |
| CSK29544_RS13375 | 2799938..2800312 | + | 375 | WP_007900668.1 | CopC domain-containing protein YobA | - |
| CSK29544_RS13380 | 2800317..2801186 | + | 870 | WP_007900666.1 | copper homeostasis membrane protein CopD | - |
| CSK29544_RS13385 | 2801201..2801539 | + | 339 | WP_004386669.1 | YebY family protein | - |
| - | 2801616..2801784 | - | 169 | - | - | Antitoxin |
| - | 2801678..2801781 | + | 104 | - | - | Toxin |
| CSK29544_RS24300 | 2802008..2802568 | + | 561 | WP_032968251.1 | hypothetical protein | - |
| CSK29544_RS13390 | 2802522..2802857 | + | 336 | WP_004386671.1 | hypothetical protein | - |
| CSK29544_RS13395 | 2803653..2804042 | + | 390 | Protein_2656 | metallophosphoesterase | - |
| CSK29544_RS23000 | 2804061..2804758 | - | 698 | Protein_2657 | IS1 family transposase | - |
| CSK29544_RS13410 | 2805076..2805267 | - | 192 | WP_004386675.1 | YebW family protein | - |
| CSK29544_RS13415 | 2805392..2805631 | - | 240 | WP_004386676.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2796767..2819661 | 22894 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T53217 NZ_CP011047:2801678-2801781 [Cronobacter sakazakii]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT53217 NZ_CP011047:c2801784-2801616 [Cronobacter sakazakii]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
