Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 556883..557154 | Replicon | chromosome |
| Accession | NZ_CP011018 | ||
| Organism | Escherichia coli strain CI5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 557013..557116 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 556883..557154 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VK74_RS02690 | 553438..554100 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| VK74_RS02695 | 554124..554780 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| VK74_RS02700 | 554882..555112 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| VK74_RS02705 | 555251..555625 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| VK74_RS02710 | 555629..556501 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| VK74_RS02715 | 556514..556855 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 556883..557154 | - | 272 | - | - | Antitoxin |
| - | 557013..557116 | + | 104 | - | - | Toxin |
| VK74_RS02725 | 557251..557907 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| VK74_RS02730 | 557908..558099 | - | 192 | WP_001296140.1 | YebW family protein | - |
| VK74_RS02735 | 558204..558440 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| VK74_RS02740 | 558558..559997 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T53176 NZ_CP011018:557013-557116 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT53176 NZ_CP011018:c557154-556883 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
