Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | phd-doc/HTH_IclR(antitoxin) |
Location | 6563954..6565635 | Replicon | chromosome |
Accession | NZ_CP010979 | ||
Organism | Pseudomonas putida S13.1.2 |
Toxin (Protein)
Gene name | doc | Uniprot ID | A0A0C5RRY8 |
Locus tag | N805_RS29090 | Protein ID | WP_019473500.1 |
Coordinates | 6564778..6565635 (-) | Length | 286 a.a. |
Antitoxin (Protein)
Gene name | phd | Uniprot ID | - |
Locus tag | N805_RS29085 | Protein ID | WP_026034667.1 |
Coordinates | 6563954..6564772 (-) | Length | 273 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
N805_RS29065 | 6559165..6560655 | - | 1491 | WP_019473495.1 | aldehyde dehydrogenase | - |
N805_RS29070 | 6560666..6561469 | - | 804 | WP_019473496.1 | aspartate dehydrogenase | - |
N805_RS29075 | 6561480..6563162 | - | 1683 | WP_019473497.1 | thiamine pyrophosphate-binding protein | - |
N805_RS29080 | 6563155..6563952 | - | 798 | WP_019473498.1 | SDR family oxidoreductase | - |
N805_RS29085 | 6563954..6564772 | - | 819 | WP_026034667.1 | IclR family transcriptional regulator | Antitoxin |
N805_RS29090 | 6564778..6565635 | - | 858 | WP_019473500.1 | alpha/beta fold hydrolase | Toxin |
N805_RS29095 | 6565640..6566179 | - | 540 | WP_019473501.1 | cupin domain-containing protein | - |
N805_RS29100 | 6566195..6566962 | - | 768 | WP_019473502.1 | SDR family oxidoreductase | - |
N805_RS29105 | 6566959..6567735 | - | 777 | WP_019473503.1 | ABC transporter permease | - |
N805_RS29110 | 6567765..6568775 | - | 1011 | WP_019473504.1 | ABC transporter substrate-binding protein | - |
N805_RS29115 | 6568807..6569652 | - | 846 | WP_019473505.1 | ABC transporter ATP-binding protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 286 a.a. Molecular weight: 30308.98 Da Isoelectric Point: 7.5315
>T53146 WP_019473500.1 NZ_CP010979:c6565635-6564778 [Pseudomonas putida S13.1.2]
MMPITPIAPLLGQLDQRFAERLLRLDQGQQAVREAGSGQAMMLLHGIGSGAASWLQVALGLSERARVIAWDAPGYGQSTP
LPMAAPKAGDYAARLLHTLDALDIERCVLVGHSLGALTAAAFAQAHPARVSRLVLLSPARGYGEQPEQGQAVRSKRLHTL
EHMGIEHMARERSAHLLSASASTQALAWVHWNMARLLPHGYRQAIELLCGDHLLRFAPPTVPCEVHCGSADAITPARDCQ
ALAEALGAPFKLIPGAGHACAIEQPDRVTGLLARALDTSLTGSVL
MMPITPIAPLLGQLDQRFAERLLRLDQGQQAVREAGSGQAMMLLHGIGSGAASWLQVALGLSERARVIAWDAPGYGQSTP
LPMAAPKAGDYAARLLHTLDALDIERCVLVGHSLGALTAAAFAQAHPARVSRLVLLSPARGYGEQPEQGQAVRSKRLHTL
EHMGIEHMARERSAHLLSASASTQALAWVHWNMARLLPHGYRQAIELLCGDHLLRFAPPTVPCEVHCGSADAITPARDCQ
ALAEALGAPFKLIPGAGHACAIEQPDRVTGLLARALDTSLTGSVL
Download Length: 858 bp
>T53146 NZ_CP010979:c6565635-6564778 [Pseudomonas putida S13.1.2]
ATGATGCCGATCACCCCCATTGCCCCACTGCTCGGGCAACTCGACCAGCGCTTCGCCGAGCGCCTGCTACGCCTGGACCA
AGGCCAGCAAGCGGTGCGCGAGGCTGGCAGTGGCCAGGCCATGATGCTGCTGCACGGCATAGGGTCGGGCGCGGCCAGCT
GGTTGCAAGTGGCCTTGGGCCTGAGCGAGCGGGCGCGGGTGATCGCCTGGGACGCCCCGGGCTACGGCCAGTCCACGCCA
CTGCCAATGGCTGCGCCCAAGGCCGGCGACTATGCCGCCCGCCTGCTGCACACGCTCGACGCCTTGGACATCGAACGCTG
CGTGCTGGTGGGCCATTCCCTCGGCGCGCTGACCGCCGCCGCTTTTGCCCAGGCCCACCCGGCCCGGGTCAGCCGCCTGG
TACTGCTGAGCCCGGCGCGCGGCTACGGGGAGCAACCCGAGCAAGGCCAGGCCGTACGCAGCAAGCGCCTGCACACCCTG
GAGCACATGGGCATCGAGCACATGGCCCGTGAGCGCAGCGCGCACTTGCTGTCTGCCAGCGCCAGCACCCAAGCGCTGGC
CTGGGTGCACTGGAACATGGCGCGGCTGCTGCCGCACGGCTACCGCCAAGCCATCGAGCTGTTGTGCGGCGACCATCTGC
TGCGCTTTGCGCCGCCGACCGTGCCCTGCGAAGTGCACTGCGGCAGCGCCGATGCCATCACCCCCGCGCGCGACTGCCAG
GCCCTGGCCGAGGCACTGGGCGCGCCTTTCAAGCTGATACCTGGCGCCGGCCATGCCTGCGCCATCGAACAACCTGACAG
GGTGACGGGCTTGCTTGCCCGTGCCCTGGACACCTCCCTCACAGGTAGCGTGCTATGA
ATGATGCCGATCACCCCCATTGCCCCACTGCTCGGGCAACTCGACCAGCGCTTCGCCGAGCGCCTGCTACGCCTGGACCA
AGGCCAGCAAGCGGTGCGCGAGGCTGGCAGTGGCCAGGCCATGATGCTGCTGCACGGCATAGGGTCGGGCGCGGCCAGCT
GGTTGCAAGTGGCCTTGGGCCTGAGCGAGCGGGCGCGGGTGATCGCCTGGGACGCCCCGGGCTACGGCCAGTCCACGCCA
CTGCCAATGGCTGCGCCCAAGGCCGGCGACTATGCCGCCCGCCTGCTGCACACGCTCGACGCCTTGGACATCGAACGCTG
CGTGCTGGTGGGCCATTCCCTCGGCGCGCTGACCGCCGCCGCTTTTGCCCAGGCCCACCCGGCCCGGGTCAGCCGCCTGG
TACTGCTGAGCCCGGCGCGCGGCTACGGGGAGCAACCCGAGCAAGGCCAGGCCGTACGCAGCAAGCGCCTGCACACCCTG
GAGCACATGGGCATCGAGCACATGGCCCGTGAGCGCAGCGCGCACTTGCTGTCTGCCAGCGCCAGCACCCAAGCGCTGGC
CTGGGTGCACTGGAACATGGCGCGGCTGCTGCCGCACGGCTACCGCCAAGCCATCGAGCTGTTGTGCGGCGACCATCTGC
TGCGCTTTGCGCCGCCGACCGTGCCCTGCGAAGTGCACTGCGGCAGCGCCGATGCCATCACCCCCGCGCGCGACTGCCAG
GCCCTGGCCGAGGCACTGGGCGCGCCTTTCAAGCTGATACCTGGCGCCGGCCATGCCTGCGCCATCGAACAACCTGACAG
GGTGACGGGCTTGCTTGCCCGTGCCCTGGACACCTCCCTCACAGGTAGCGTGCTATGA
Antitoxin
Download Length: 273 a.a. Molecular weight: 30009.55 Da Isoelectric Point: 6.6424
>AT53146 WP_026034667.1 NZ_CP010979:c6564772-6563954 [Pseudomonas putida S13.1.2]
MDPLKENQDKYIVPGLERGLLLLCEFSRQNRTLTAPELARRLSLPRSTIFRLLTTLETMGFVTRSGNEYRLGMSVLRLGF
EYLASLELTELGQPLLARLCDHLNYPSNLVVRDGRSIVYVAKVSPPSVFSSAVTVGTRLPAHATVLGRILLADLSLGELR
ELYPEEHLEQFSACTPKTVLELFDLVQADRLRGYVSGEGFFEPSISTVAAPVRDVSGQVVAALGLTIPTVQIGHVNFDNM
LGQVRNSADELSRLLNYTPNAGHGRVTALMRD
MDPLKENQDKYIVPGLERGLLLLCEFSRQNRTLTAPELARRLSLPRSTIFRLLTTLETMGFVTRSGNEYRLGMSVLRLGF
EYLASLELTELGQPLLARLCDHLNYPSNLVVRDGRSIVYVAKVSPPSVFSSAVTVGTRLPAHATVLGRILLADLSLGELR
ELYPEEHLEQFSACTPKTVLELFDLVQADRLRGYVSGEGFFEPSISTVAAPVRDVSGQVVAALGLTIPTVQIGHVNFDNM
LGQVRNSADELSRLLNYTPNAGHGRVTALMRD
Download Length: 819 bp
>AT53146 NZ_CP010979:c6564772-6563954 [Pseudomonas putida S13.1.2]
ATGGATCCGTTGAAGGAAAACCAGGACAAGTACATTGTTCCGGGCCTGGAACGCGGCCTGCTACTGCTGTGCGAATTCAG
CCGGCAGAACCGTACCCTGACCGCCCCCGAGCTGGCCCGACGCCTGTCGCTACCACGCTCGACCATCTTCCGCCTGCTGA
CCACCCTGGAAACCATGGGCTTCGTCACCCGCAGCGGCAACGAGTACCGCCTCGGCATGTCGGTGCTGCGCCTGGGCTTC
GAGTACCTGGCCTCGCTGGAGCTGACAGAGCTCGGCCAGCCACTGTTGGCACGGCTGTGCGACCACCTCAACTACCCGAG
CAACCTGGTGGTGCGCGACGGCCGCTCGATCGTCTACGTGGCCAAGGTCTCGCCACCCTCGGTGTTCTCCAGTGCGGTCA
CCGTCGGCACCCGCCTCCCCGCCCATGCCACAGTACTGGGTCGCATCCTGCTGGCTGACCTGAGCCTGGGCGAACTGCGC
GAACTGTACCCGGAAGAGCACCTGGAGCAGTTTTCAGCGTGCACGCCAAAAACCGTGCTGGAACTCTTCGACCTGGTCCA
GGCCGACCGCCTGCGGGGCTATGTCAGCGGCGAAGGCTTTTTCGAACCGAGCATCTCCACGGTCGCAGCGCCGGTGCGCG
ATGTCAGCGGCCAGGTGGTCGCCGCGCTCGGCCTGACCATACCCACCGTGCAGATCGGCCACGTCAATTTCGACAACATG
CTGGGCCAGGTACGCAATAGCGCCGATGAGCTGTCGCGGCTGCTCAACTACACACCCAACGCAGGCCACGGCCGCGTCAC
CGCCCTGATGAGGGATTGA
ATGGATCCGTTGAAGGAAAACCAGGACAAGTACATTGTTCCGGGCCTGGAACGCGGCCTGCTACTGCTGTGCGAATTCAG
CCGGCAGAACCGTACCCTGACCGCCCCCGAGCTGGCCCGACGCCTGTCGCTACCACGCTCGACCATCTTCCGCCTGCTGA
CCACCCTGGAAACCATGGGCTTCGTCACCCGCAGCGGCAACGAGTACCGCCTCGGCATGTCGGTGCTGCGCCTGGGCTTC
GAGTACCTGGCCTCGCTGGAGCTGACAGAGCTCGGCCAGCCACTGTTGGCACGGCTGTGCGACCACCTCAACTACCCGAG
CAACCTGGTGGTGCGCGACGGCCGCTCGATCGTCTACGTGGCCAAGGTCTCGCCACCCTCGGTGTTCTCCAGTGCGGTCA
CCGTCGGCACCCGCCTCCCCGCCCATGCCACAGTACTGGGTCGCATCCTGCTGGCTGACCTGAGCCTGGGCGAACTGCGC
GAACTGTACCCGGAAGAGCACCTGGAGCAGTTTTCAGCGTGCACGCCAAAAACCGTGCTGGAACTCTTCGACCTGGTCCA
GGCCGACCGCCTGCGGGGCTATGTCAGCGGCGAAGGCTTTTTCGAACCGAGCATCTCCACGGTCGCAGCGCCGGTGCGCG
ATGTCAGCGGCCAGGTGGTCGCCGCGCTCGGCCTGACCATACCCACCGTGCAGATCGGCCACGTCAATTTCGACAACATG
CTGGGCCAGGTACGCAATAGCGCCGATGAGCTGTCGCGGCTGCTCAACTACACACCCAACGCAGGCCACGGCCGCGTCAC
CGCCCTGATGAGGGATTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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