Detailed information of TA system TA053139

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): tacT-ataR/DUF1778(antitoxin)
• Location: 3137302..3138068
• Replicon: chromosome
• Accession: NZ_CP010979
• Organism: Pseudomonas putida S13.1.2

Toxin (Protein)

• Gene name: tacT
• Uniprot ID: -
• Locus tag: N805_RS13875
• Protein ID: WP_155412729.1
• Coordinates: 3137302..3137784 (-)
• Length: 161 a.a.

Antitoxin (Protein)

• Gene name: ataR
• Uniprot ID: A0A0C5S9W0
• Locus tag: N805_RS13880
• Protein ID: WP_019472814.1
• Coordinates: 3137781..3138068 (-)
• Length: 96 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
N805_RS29870	3132582..3132983	+	402	WP_080956809.1	GFA family protein	-
N805_RS13860	3133099..3133584	+	486	WP_033692634.1	sigma-70 family RNA polymerase sigma factor	-
N805_RS13865	3133581..3134522	+	942	WP_019472811.1	FecR domain-containing protein	-
N805_RS13870	3134623..3137148	+	2526	WP_019472812.1	TonB-dependent siderophore receptor	-
N805_RS13875	3137302..3137784	-	483	WP_155412729.1	hypothetical protein	Toxin
N805_RS13880	3137781..3138068	-	288	WP_019472814.1	DUF1778 domain-containing protein	Antitoxin
N805_RS30520	3138683..3140113	+	1431	WP_155412691.1	hypothetical protein	-
N805_RS13890	3140598..3141587	-	990	WP_019472816.1	hypothetical protein	-
N805_RS29875	3141649..3142008	-	360	WP_080956810.1	hypothetical protein	-
N805_RS13895	3142320..3142526	+	207	WP_026034614.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Vibrio phage ICP1, Orf50 (1-94)

Sequences

Toxin

Protein

• Length: 161 a.a.
• Molecular weight: 17540.30 Da
• Isoelectric Point: 8.8361

>T53139 WP_155412729.1 NZ_CP010979:c3137784-3137302 [Pseudomonas putida S13.1.2]
MSKPVKLSEVHDFTGFDCGERSINEYLHKQARKAQQEQLAVVYVTCFKGTCQVAGFYTLSSGSIARQSVLPRRLQRNTPT
AHPATILGRMGVTLVAQGYGFAEGLLQDAIFRVMASTEVVASSAILVHPLDEALADFYARKAGFVRCPDLSPLTMMLSLR

Nucleotide

• Length: 483 bp

>T53139 NZ_CP010979:c3137784-3137302 [Pseudomonas putida S13.1.2]
CTGAGCAAGCCCGTAAAGCTGAGTGAAGTTCATGACTTCACTGGTTTTGACTGTGGCGAACGCTCTATCAACGAGTACCT
GCACAAGCAGGCAAGGAAGGCCCAGCAAGAACAGCTGGCTGTGGTGTATGTGACGTGCTTTAAGGGTACCTGCCAGGTGG
CAGGGTTCTACACCTTGTCCAGCGGCTCGATTGCGCGGCAGTCTGTGTTGCCCCGGAGACTGCAGCGCAATACGCCGACT
GCACACCCGGCTACCATTCTTGGTCGGATGGGGGTGACCCTTGTGGCTCAAGGCTACGGGTTTGCCGAAGGATTGCTGCA
GGATGCGATTTTTCGGGTCATGGCGTCTACGGAGGTGGTGGCTTCTTCGGCGATTCTGGTTCATCCGCTTGACGAAGCGC
TTGCCGATTTCTACGCCCGTAAGGCCGGGTTTGTTCGCTGTCCTGATTTGTCTCCGCTGACTATGATGTTGTCCTTGCGC
TAG

Antitoxin

Protein

• Length: 96 a.a.
• Molecular weight: 10961.67 Da
• Isoelectric Point: 6.9549

>AT53139 WP_019472814.1 NZ_CP010979:c3138068-3137781 [Pseudomonas putida S13.1.2]
MSAQIKEREKPVPINMRVDTRKRSLIDAAVELLGTDRTSFILDAACRRAEEVIMDRQLFLLSDEAFDRFEQALEHNALKD
NKCLQKLMSKPAPWS

Nucleotide

• Length: 288 bp

>AT53139 NZ_CP010979:c3138068-3137781 [Pseudomonas putida S13.1.2]
ATGTCGGCTCAAATCAAAGAGCGTGAAAAGCCCGTACCGATCAACATGCGAGTGGATACCAGGAAACGCAGCCTGATCGA
CGCGGCTGTAGAGCTGCTGGGAACGGACAGAACCAGCTTCATCCTGGATGCCGCCTGCCGCCGAGCAGAAGAGGTGATCA
TGGACCGCCAGCTGTTTCTTCTCAGCGACGAAGCCTTCGACCGCTTCGAGCAGGCACTGGAGCACAACGCGTTAAAGGAT
AACAAGTGCCTACAGAAACTCATGTCCAAACCCGCTCCGTGGAGCTGA

Structures

Antitoxin

• AlphaFold DB: A0A0C5S9W0