Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/HicA-HicB |
| Location | 2906344..2906941 | Replicon | chromosome |
| Accession | NZ_CP010954 | ||
| Organism | Sphingobium sp. YBL2 | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | A0A7M2GGB0 |
| Locus tag | TZ53_RS13425 | Protein ID | WP_025547159.1 |
| Coordinates | 2906759..2906941 (-) | Length | 61 a.a. |
Antitoxin (Protein)
| Gene name | hicA | Uniprot ID | A0A0C5XPR5 |
| Locus tag | TZ53_RS13420 | Protein ID | WP_044661606.1 |
| Coordinates | 2906344..2906736 (-) | Length | 131 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TZ53_RS13385 (TZ53_13385) | 2902660..2902959 | + | 300 | WP_157009818.1 | hypothetical protein | - |
| TZ53_RS13390 (TZ53_13390) | 2903021..2903512 | + | 492 | WP_044661600.1 | hypothetical protein | - |
| TZ53_RS13395 (TZ53_13395) | 2903509..2903823 | + | 315 | WP_084694377.1 | hypothetical protein | - |
| TZ53_RS13400 (TZ53_13400) | 2903866..2904282 | + | 417 | WP_157009819.1 | hypothetical protein | - |
| TZ53_RS13405 (TZ53_13405) | 2904439..2905125 | + | 687 | WP_044661603.1 | N-acetylmuramidase family protein | - |
| TZ53_RS13410 (TZ53_13410) | 2905122..2905688 | + | 567 | WP_157009820.1 | hypothetical protein | - |
| TZ53_RS13415 (TZ53_13415) | 2906011..2906313 | - | 303 | WP_044661605.1 | hypothetical protein | - |
| TZ53_RS13420 (TZ53_13420) | 2906344..2906736 | - | 393 | WP_044661606.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| TZ53_RS13425 (TZ53_13425) | 2906759..2906941 | - | 183 | WP_025547159.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| TZ53_RS26835 | 2907200..2907343 | - | 144 | WP_157009821.1 | hypothetical protein | - |
| TZ53_RS13430 (TZ53_13430) | 2907521..2907796 | + | 276 | WP_044661607.1 | hypothetical protein | - |
| TZ53_RS13435 (TZ53_13435) | 2907793..2908197 | + | 405 | WP_044661608.1 | hypothetical protein | - |
| TZ53_RS13440 (TZ53_13440) | 2908194..2908421 | - | 228 | WP_044661609.1 | hypothetical protein | - |
| TZ53_RS26840 | 2908440..2908589 | - | 150 | WP_157009823.1 | hypothetical protein | - |
| TZ53_RS13445 (TZ53_13445) | 2908676..2909218 | - | 543 | WP_044661610.1 | hypothetical protein | - |
| TZ53_RS13450 (TZ53_13450) | 2909215..2910369 | - | 1155 | WP_044661611.1 | hypothetical protein | - |
| TZ53_RS13455 (TZ53_13455) | 2910663..2911937 | - | 1275 | WP_044661612.1 | integrase arm-type DNA-binding domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2864339..2911937 | 47598 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 61 a.a. Molecular weight: 6896.10 Da Isoelectric Point: 11.0046
>T53112 WP_025547159.1 NZ_CP010954:c2906941-2906759 [Sphingobium sp. YBL2]
MERDSKKIVRRLLEEGYEQVSVKGSHHKFRKGDRTIIVPHPKKDLPLGTARSIAKMAGWL
MERDSKKIVRRLLEEGYEQVSVKGSHHKFRKGDRTIIVPHPKKDLPLGTARSIAKMAGWL
Download Length: 183 bp
>T53112 NZ_CP010954:c2906941-2906759 [Sphingobium sp. YBL2]
ATGGAACGGGACAGCAAAAAGATCGTCAGGCGGCTTCTGGAAGAGGGCTATGAACAGGTTTCGGTGAAGGGCTCTCACCA
CAAATTCAGGAAGGGCGACCGGACGATCATCGTGCCCCACCCGAAGAAAGACCTGCCGCTGGGAACGGCGCGAAGCATAG
CAAAGATGGCGGGGTGGCTGTGA
ATGGAACGGGACAGCAAAAAGATCGTCAGGCGGCTTCTGGAAGAGGGCTATGAACAGGTTTCGGTGAAGGGCTCTCACCA
CAAATTCAGGAAGGGCGACCGGACGATCATCGTGCCCCACCCGAAGAAAGACCTGCCGCTGGGAACGGCGCGAAGCATAG
CAAAGATGGCGGGGTGGCTGTGA
Antitoxin
Download Length: 131 a.a. Molecular weight: 14390.27 Da Isoelectric Point: 4.4634
>AT53112 WP_044661606.1 NZ_CP010954:c2906736-2906344 [Sphingobium sp. YBL2]
MKYFYAIVHKDADSAFGVSFPDLPGCFSAADRQEDVLPNAVEALELWFEDAEEIDPRPVDQVREAVKEDLAQGAFLLAVP
RITSANKLARVNLSLDRGMLDAIDQAAALRKLTRSAFMAEAARNEIEGRH
MKYFYAIVHKDADSAFGVSFPDLPGCFSAADRQEDVLPNAVEALELWFEDAEEIDPRPVDQVREAVKEDLAQGAFLLAVP
RITSANKLARVNLSLDRGMLDAIDQAAALRKLTRSAFMAEAARNEIEGRH
Download Length: 393 bp
>AT53112 NZ_CP010954:c2906736-2906344 [Sphingobium sp. YBL2]
ATGAAATATTTTTACGCCATCGTTCACAAGGATGCGGACAGCGCTTTTGGTGTCAGCTTTCCCGATCTGCCGGGTTGCTT
CTCGGCGGCCGACCGTCAGGAAGACGTACTCCCCAATGCGGTGGAGGCGCTGGAACTGTGGTTCGAAGATGCGGAGGAAA
TTGATCCTCGCCCGGTCGATCAGGTGCGCGAAGCGGTGAAAGAGGATCTGGCGCAGGGCGCCTTCCTTCTTGCCGTTCCG
CGCATCACATCGGCCAACAAGCTGGCCCGCGTCAATCTGTCGCTGGATCGGGGCATGCTCGACGCCATCGATCAGGCGGC
AGCGCTTCGGAAGCTGACCCGCAGCGCGTTCATGGCCGAGGCGGCCCGGAACGAAATCGAAGGCCGCCATTGA
ATGAAATATTTTTACGCCATCGTTCACAAGGATGCGGACAGCGCTTTTGGTGTCAGCTTTCCCGATCTGCCGGGTTGCTT
CTCGGCGGCCGACCGTCAGGAAGACGTACTCCCCAATGCGGTGGAGGCGCTGGAACTGTGGTTCGAAGATGCGGAGGAAA
TTGATCCTCGCCCGGTCGATCAGGTGCGCGAAGCGGTGAAAGAGGATCTGGCGCAGGGCGCCTTCCTTCTTGCCGTTCCG
CGCATCACATCGGCCAACAAGCTGGCCCGCGTCAATCTGTCGCTGGATCGGGGCATGCTCGACGCCATCGATCAGGCGGC
AGCGCTTCGGAAGCTGACCCGCAGCGCGTTCATGGCCGAGGCGGCCCGGAACGAAATCGAAGGCCGCCATTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7M2GGB0 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0C5XPR5 |