Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | mazEF/PRK09907-MazE |
| Location | 1533018..1533592 | Replicon | chromosome |
| Accession | NZ_CP010954 | ||
| Organism | Sphingobium sp. YBL2 | ||
Toxin (Protein)
| Gene name | mazF | Uniprot ID | A0A4Q4IXD9 |
| Locus tag | TZ53_RS07105 | Protein ID | WP_044660856.1 |
| Coordinates | 1533018..1533350 (-) | Length | 111 a.a. |
Antitoxin (Protein)
| Gene name | mazE | Uniprot ID | - |
| Locus tag | TZ53_RS07110 | Protein ID | WP_082166021.1 |
| Coordinates | 1533350..1533592 (-) | Length | 81 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TZ53_RS27340 | 1528314..1528775 | - | 462 | WP_197565241.1 | hypothetical protein | - |
| TZ53_RS27345 | 1528782..1529048 | - | 267 | WP_197565242.1 | hypothetical protein | - |
| TZ53_RS07085 (TZ53_07085) | 1529045..1529365 | - | 321 | WP_037481402.1 | hypothetical protein | - |
| TZ53_RS26685 | 1529424..1529567 | - | 144 | WP_157009786.1 | hypothetical protein | - |
| TZ53_RS25985 (TZ53_07090) | 1529681..1530780 | - | 1100 | Protein_1427 | TonB-dependent receptor | - |
| TZ53_RS26690 | 1530771..1530923 | - | 153 | Protein_1428 | DUF736 domain-containing protein | - |
| TZ53_RS25995 | 1532028..1532474 | - | 447 | WP_083199024.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| TZ53_RS07100 (TZ53_07100) | 1532474..1532743 | - | 270 | WP_044660855.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| TZ53_RS07105 (TZ53_07105) | 1533018..1533350 | - | 333 | WP_044660856.1 | endoribonuclease MazF | Toxin |
| TZ53_RS07110 (TZ53_07110) | 1533350..1533592 | - | 243 | WP_082166021.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
| TZ53_RS07115 (TZ53_07115) | 1534294..1534551 | + | 258 | WP_044660858.1 | addiction module antitoxin | - |
| TZ53_RS07120 (TZ53_07120) | 1534557..1534871 | + | 315 | WP_044660859.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| TZ53_RS07125 (TZ53_07125) | 1534960..1535223 | - | 264 | Protein_1435 | transposase | - |
| TZ53_RS07130 (TZ53_07130) | 1535340..1535561 | + | 222 | WP_044660861.1 | hypothetical protein | - |
| TZ53_RS07135 (TZ53_07135) | 1535801..1536175 | - | 375 | WP_044660862.1 | hypothetical protein | - |
| TZ53_RS07140 (TZ53_07140) | 1536249..1537163 | - | 915 | WP_044660863.1 | LysR family transcriptional regulator | - |
| TZ53_RS07145 (TZ53_07145) | 1537304..1537633 | + | 330 | WP_044660864.1 | nuclear transport factor 2 family protein | - |
| TZ53_RS07150 (TZ53_07150) | 1537695..1538474 | + | 780 | WP_044660865.1 | SDR family oxidoreductase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 1534921..1535235 | 314 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 111 a.a. Molecular weight: 12082.28 Da Isoelectric Point: 9.9037
>T53111 WP_044660856.1 NZ_CP010954:c1533350-1533018 [Sphingobium sp. YBL2]
MAKYVPDMGDIVWLNFDPQAGHEQAGHRPALVLSPAAYNRVRGMMICCPMTSKIKGYPFEVLISQNLPSAVLADQLKSVD
WMTRKATKKGTVSQAALLEVQAKIRALLAI
MAKYVPDMGDIVWLNFDPQAGHEQAGHRPALVLSPAAYNRVRGMMICCPMTSKIKGYPFEVLISQNLPSAVLADQLKSVD
WMTRKATKKGTVSQAALLEVQAKIRALLAI
Download Length: 333 bp
>T53111 NZ_CP010954:c1533350-1533018 [Sphingobium sp. YBL2]
ATGGCCAAATATGTCCCCGACATGGGCGATATCGTCTGGCTAAACTTTGATCCCCAGGCTGGACATGAACAGGCTGGTCA
TCGACCTGCCCTTGTCCTGTCACCGGCAGCCTATAATCGCGTGCGCGGGATGATGATTTGTTGTCCTATGACGAGCAAAA
TCAAAGGCTATCCCTTTGAGGTGTTAATCAGCCAGAACCTGCCAAGTGCTGTATTGGCAGATCAGCTCAAAAGTGTTGAC
TGGATGACACGGAAGGCGACCAAAAAAGGAACAGTATCGCAAGCGGCGCTGCTGGAAGTTCAGGCAAAAATCCGTGCTCT
GTTGGCGATTTAA
ATGGCCAAATATGTCCCCGACATGGGCGATATCGTCTGGCTAAACTTTGATCCCCAGGCTGGACATGAACAGGCTGGTCA
TCGACCTGCCCTTGTCCTGTCACCGGCAGCCTATAATCGCGTGCGCGGGATGATGATTTGTTGTCCTATGACGAGCAAAA
TCAAAGGCTATCCCTTTGAGGTGTTAATCAGCCAGAACCTGCCAAGTGCTGTATTGGCAGATCAGCTCAAAAGTGTTGAC
TGGATGACACGGAAGGCGACCAAAAAAGGAACAGTATCGCAAGCGGCGCTGCTGGAAGTTCAGGCAAAAATCCGTGCTCT
GTTGGCGATTTAA
Antitoxin
Download Length: 81 a.a. Molecular weight: 8799.10 Da Isoelectric Point: 4.5489
>AT53111 WP_082166021.1 NZ_CP010954:c1533592-1533350 [Sphingobium sp. YBL2]
MRVRVKKWGNSASVRIPSSIMAAAALHIDQEVDVREEEGRVIIEPITAPAFTLEGLLAGMKPENFPENVDFGPPVGNELW
MRVRVKKWGNSASVRIPSSIMAAAALHIDQEVDVREEEGRVIIEPITAPAFTLEGLLAGMKPENFPENVDFGPPVGNELW
Download Length: 243 bp
>AT53111 NZ_CP010954:c1533592-1533350 [Sphingobium sp. YBL2]
ATGCGTGTGCGAGTGAAAAAGTGGGGTAATAGTGCTTCGGTCAGGATTCCTTCCTCGATTATGGCCGCGGCTGCGCTGCA
TATCGATCAGGAGGTGGATGTCAGGGAAGAAGAGGGCCGGGTCATCATCGAGCCGATCACCGCACCTGCCTTCACTCTTG
AGGGGTTGCTGGCGGGCATGAAGCCTGAAAACTTTCCTGAAAACGTCGATTTCGGTCCGCCTGTCGGCAATGAGCTTTGG
TAA
ATGCGTGTGCGAGTGAAAAAGTGGGGTAATAGTGCTTCGGTCAGGATTCCTTCCTCGATTATGGCCGCGGCTGCGCTGCA
TATCGATCAGGAGGTGGATGTCAGGGAAGAAGAGGGCCGGGTCATCATCGAGCCGATCACCGCACCTGCCTTCACTCTTG
AGGGGTTGCTGGCGGGCATGAAGCCTGAAAACTTTCCTGAAAACGTCGATTTCGGTCCGCCTGTCGGCAATGAGCTTTGG
TAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|