53055

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/Txe-RelB
Location 2499445..2499968 Replicon chromosome
Accession NZ_CP010890
Organism Staphylococcus aureus strain SA564

Toxin (Protein)


Gene name relE Uniprot ID A0A3A5LQI3
Locus tag RT87_RS12705 Protein ID WP_000074049.1
Coordinates 2499445..2499711 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID W8TQT5
Locus tag RT87_RS12710 Protein ID WP_000587616.1
Coordinates 2499711..2499968 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RT87_RS12685 2494752..2495939 - 1188 WP_000026189.1 MFS transporter -
RT87_RS12690 2496335..2497111 - 777 WP_000072149.1 iron export ABC transporter permease subunit FetB -
RT87_RS12695 2497104..2497766 - 663 WP_000923526.1 ATP-binding cassette domain-containing protein -
RT87_RS12700 2498014..2499090 - 1077 WP_001076673.1 M42 family metallopeptidase -
RT87_RS12705 2499445..2499711 - 267 WP_000074049.1 Txe/YoeB family addiction module toxin Toxin
RT87_RS12710 2499711..2499968 - 258 WP_000587616.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
RT87_RS12720 2500327..2500782 + 456 WP_000732076.1 DUF1307 domain-containing protein -
RT87_RS12725 2500950..2502527 - 1578 WP_000143494.1 FMN-binding glutamate synthase family protein -
RT87_RS12730 2502722..2503471 + 750 WP_000072461.1 CPBP family intramembrane metalloprotease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(4-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10676.24 Da        Isoelectric Point: 10.1597

>T53055 WP_000074049.1 NZ_CP010890:c2499711-2499445 [Staphylococcus aureus]
MSNYTVKIKNSAKSDLRKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRVVYTVDDRNKEVLI
LSAWSHYD

Download         Length: 267 bp

>T53055 NZ_CP010890:c2499711-2499445 [Staphylococcus aureus]
ATGAGCAATTACACGGTTAAGATTAAAAATTCAGCGAAATCAGATTTAAGGAAAATAAAACATTCTTATTTAAAGAAGTC
ATTTTTAGAAATTGTTGAGACTTTAAAAAATGATCCGTATAAAATAACACAATCTTTTGAAAAATTAGAGCCTAAATATT
TAGAGCGATATTCAAGAAGAATTAACCATCAGCACAGGGTCGTCTATACCGTAGATGATCGAAATAAAGAAGTATTAATA
CTATCGGCATGGTCACATTATGATTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9774.73 Da        Isoelectric Point: 4.1353

>AT53055 WP_000587616.1 NZ_CP010890:c2499968-2499711 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDNSGTTNIDDI
DWDNL

Download         Length: 258 bp

>AT53055 NZ_CP010890:c2499968-2499711 [Staphylococcus aureus]
ATGATTATCACTAGCCCTACAGAAGCGAGAAAAGATTTTTATCAATTACTAAAAAATGTTAATAATAATCACGAACCAAT
TTATATTAGTGGCAATAATGCCGAAAATAATGCTGTGATTATAGGTTTAGAAGATTGGAAAAGTATACAAGAGACAATAT
ATCTTGAATCTACTGGTACAATGGACAAAGTAAGAGAAAGAGAAAAAGATAATAGTGGTACAACAAATATAGATGATATT
GATTGGGATAATCTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3A5LQI3

Antitoxin

Source ID Structure
AlphaFold DB W8TQT5

References