Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1975624..1975892 | Replicon | chromosome |
| Accession | NZ_CP010876 | ||
| Organism | Escherichia coli strain MNCRE44 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1975662..1975764 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1975624..1975892 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SY51_RS10145 | 1972782..1974221 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| SY51_RS10150 | 1974338..1974574 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| SY51_RS10155 | 1974679..1974870 | + | 192 | WP_001296140.1 | YebW family protein | - |
| SY51_RS10160 | 1974871..1975527 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 1975624..1975892 | + | 269 | - | - | Antitoxin |
| - | 1975662..1975764 | - | 103 | - | - | Toxin |
| SY51_RS10170 | 1975922..1976263 | - | 342 | WP_000976472.1 | YebY family protein | - |
| SY51_RS10175 | 1976276..1977148 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| SY51_RS10180 | 1977152..1977526 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| SY51_RS10185 | 1977665..1977895 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| SY51_RS10190 | 1977997..1978653 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| SY51_RS10195 | 1978677..1979339 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T52995 NZ_CP010876:c1975764-1975662 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT52995 NZ_CP010876:1975624-1975892 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
