52809

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 3893415..3893920 Replicon chromosome
Accession NZ_CP010555
Organism Pseudomonas aeruginosa strain FRD1

Toxin (Protein)


Gene name parE Uniprot ID V6A7K8
Locus tag EG09_RS17730 Protein ID WP_003083773.1
Coordinates 3893415..3893696 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID A0A1C7BDS9
Locus tag EG09_RS17735 Protein ID WP_003083775.1
Coordinates 3893693..3893920 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EG09_RS17705 3888667..3890016 + 1350 WP_003142411.1 C4-dicarboxylate transporter DctA -
EG09_RS17710 3890065..3890751 + 687 WP_003083762.1 FadR family transcriptional regulator -
EG09_RS17715 3890852..3891585 + 734 Protein_3551 GntR family transcriptional regulator -
EG09_RS17720 3891789..3892175 + 387 WP_014602345.1 aegerolysin family protein -
EG09_RS17725 3892207..3893115 - 909 WP_003083769.1 LysR family transcriptional regulator -
EG09_RS17730 3893415..3893696 - 282 WP_003083773.1 type II toxin-antitoxin system toxin ParE Toxin
EG09_RS17735 3893693..3893920 - 228 WP_003083775.1 CopG family ribbon-helix-helix protein Antitoxin
EG09_RS17740 3894096..3894716 - 621 WP_003101226.1 hypothetical protein -
EG09_RS17745 3894817..3895317 + 501 WP_003101228.1 LEA type 2 family protein -
EG09_RS17750 3895390..3895731 + 342 WP_003101229.1 alkylphosphonate utilization protein -
EG09_RS17755 3895813..3897240 - 1428 WP_003083784.1 GABA permease -
EG09_RS17760 3897409..3898902 - 1494 WP_003083788.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-87)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10462.19 Da        Isoelectric Point: 10.0435

>T52809 WP_003083773.1 NZ_CP010555:c3893696-3893415 [Pseudomonas aeruginosa]
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP

Download         Length: 282 bp

>T52809 NZ_CP010555:c3893696-3893415 [Pseudomonas aeruginosa]
ATGAGCCTGAAGTGGACCCGCAAGGCGGCCGCCGACCTGGACGCCATCTACGACCATTACGTCGTGCTGATCGGCCCGGA
AAAAGCTCTGAAAGCCGTTCAGGACATCGTCGAGCAGGTGAAACCGCTGCAGCAGGTAGCCAACCAGGGGGCAGGGCGGC
CCAGCGAGGTGCCAGGCGTACGCACCCTGACCCTGGAGCGCTGGCCGTTCAGCGCCCCGTTTCGGGTTAAAGGCAAGGAA
ATCCAGATTTTGCGCATCGACAGGGTCGAAATTACCCCCTGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8556.58 Da        Isoelectric Point: 5.5740

>AT52809 WP_003083775.1 NZ_CP010555:c3893920-3893693 [Pseudomonas aeruginosa]
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHTEIEKRWGLQ

Download         Length: 228 bp

>AT52809 NZ_CP010555:c3893920-3893693 [Pseudomonas aeruginosa]
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGACGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACCCACCGCGA
CCGCCCCTACCACCTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCTGCCATCGATGAAGGCT
TGGCCGATGCCAATGCCGGTCGCCTGCTGGAACACACCGAGATCGAGAAGCGCTGGGGGCTGCAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6XRW

Antitoxin

Source ID Structure
AlphaFold DB A0A1C7BDS9

References